miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 16991 0.67 0.963367
Target:  5'- cCGCAGGGAcaGCAgGcGCcCGCGGUGGc -3'
miRNA:   3'- -GCGUCUUUa-CGUgCcUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 148410 0.67 0.963367
Target:  5'- uGCgAGGGAgccaugGUGCGGGCggccgCGCcGGCGGc -3'
miRNA:   3'- gCG-UCUUUa-----CGUGCCUGa----GCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 57288 0.67 0.963367
Target:  5'- aGCAGGucGGUGCGCGGcgACUgGUGGauaagcgaGGg -3'
miRNA:   3'- gCGUCU--UUACGUGCC--UGAgCGCCg-------CC- -5'
14086 5' -55.4 NC_003521.1 + 148446 0.67 0.960015
Target:  5'- gGCGGAgcgAcgGCAgCGGGCgaGCGGaCGGg -3'
miRNA:   3'- gCGUCU---UuaCGU-GCCUGagCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 133972 0.67 0.960015
Target:  5'- gGCGuccAUGCGCGGACgcuggcCGCGGCc- -3'
miRNA:   3'- gCGUcuuUACGUGCCUGa-----GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 123052 0.67 0.959319
Target:  5'- cCGCcaccaugcUGCugGGACggcgGCGGCGGa -3'
miRNA:   3'- -GCGucuuu---ACGugCCUGag--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 203689 0.67 0.958616
Target:  5'- aGCAGAAGccgcgcggcauguUGCGCGccgugaucuuguccGACaCGCGGUGGc -3'
miRNA:   3'- gCGUCUUU-------------ACGUGC--------------CUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 52673 0.67 0.956457
Target:  5'- gGCAGcAGcgGCACcGGCagCGuCGGCGGu -3'
miRNA:   3'- gCGUC-UUuaCGUGcCUGa-GC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 103581 0.67 0.956457
Target:  5'- gCGCAGAAGcugcGCACGuACUCcuccaCGGUGGg -3'
miRNA:   3'- -GCGUCUUUa---CGUGCcUGAGc----GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 27087 0.67 0.956457
Target:  5'- gCGCAGGcAGUGCA-GGcuCUCGaCGGCGc -3'
miRNA:   3'- -GCGUCU-UUACGUgCCu-GAGC-GCCGCc -5'
14086 5' -55.4 NC_003521.1 + 131740 0.67 0.956457
Target:  5'- uCGCuGGAcGUGCACGGcCUgGaggaccaGGCGGu -3'
miRNA:   3'- -GCG-UCUuUACGUGCCuGAgCg------CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 5636 0.67 0.956457
Target:  5'- uCGCGGGA----ACGGACccacaUgGCGGCGGa -3'
miRNA:   3'- -GCGUCUUuacgUGCCUG-----AgCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 29841 0.67 0.956457
Target:  5'- uGCAGA--UGCACGGACUguucaCGCc-CGGg -3'
miRNA:   3'- gCGUCUuuACGUGCCUGA-----GCGccGCC- -5'
14086 5' -55.4 NC_003521.1 + 182361 0.67 0.956089
Target:  5'- gGCAGAcccuggucgacguGGUGCGCGGAaagUUCGCccGGCa- -3'
miRNA:   3'- gCGUCU-------------UUACGUGCCU---GAGCG--CCGcc -5'
14086 5' -55.4 NC_003521.1 + 163370 0.67 0.952689
Target:  5'- gGCGGcAGUGuCACGGGCaccaaCGGCGGc -3'
miRNA:   3'- gCGUCuUUAC-GUGCCUGagc--GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 16499 0.67 0.952689
Target:  5'- aCGCuacga-GCACGGGCU-GCGGCGc -3'
miRNA:   3'- -GCGucuuuaCGUGCCUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 207750 0.67 0.952689
Target:  5'- uGCAGAAGgccaucuuCAUGGACcCGCugGGCGGc -3'
miRNA:   3'- gCGUCUUUac------GUGCCUGaGCG--CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 177458 0.67 0.952689
Target:  5'- cCGUAGAAGcUGCugACGGuCUgCGCGGCcguGGa -3'
miRNA:   3'- -GCGUCUUU-ACG--UGCCuGA-GCGCCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 36800 0.67 0.952689
Target:  5'- uGCGGAGccGCucgcggacgGCGGACUCG-GGCa- -3'
miRNA:   3'- gCGUCUUuaCG---------UGCCUGAGCgCCGcc -5'
14086 5' -55.4 NC_003521.1 + 129284 0.67 0.952689
Target:  5'- gGUAGAGGcGCcgGCGGuACUUuuugagcgGCGGCGGg -3'
miRNA:   3'- gCGUCUUUaCG--UGCC-UGAG--------CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.