miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 40706 0.73 0.744344
Target:  5'- cCGguGAGAUGCACcacaUCGCGGCGc -3'
miRNA:   3'- -GCguCUUUACGUGccugAGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 40877 0.69 0.908949
Target:  5'- cCGCGGAGGga-AgGGAC-CGgGGCGGg -3'
miRNA:   3'- -GCGUCUUUacgUgCCUGaGCgCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 43146 0.76 0.578644
Target:  5'- gCGUGGAGGUGCACGcGCUgGUGGCGc -3'
miRNA:   3'- -GCGUCUUUACGUGCcUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 43470 0.69 0.896802
Target:  5'- aGCGGGccaGCGCGGcggccgugcugGC-CGCGGCGGc -3'
miRNA:   3'- gCGUCUuuaCGUGCC-----------UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 45516 0.66 0.972237
Target:  5'- cCGUcGAGccGCAUGGACUUG-GaGCGGg -3'
miRNA:   3'- -GCGuCUUuaCGUGCCUGAGCgC-CGCC- -5'
14086 5' -55.4 NC_003521.1 + 46400 0.68 0.944511
Target:  5'- uGCGuGggGcGCGCGGGCcaggaaGCGGCGa -3'
miRNA:   3'- gCGU-CuuUaCGUGCCUGag----CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 46444 0.66 0.969473
Target:  5'- gGCGGGGcUGCGgGGGCUgGuCGGCc- -3'
miRNA:   3'- gCGUCUUuACGUgCCUGAgC-GCCGcc -5'
14086 5' -55.4 NC_003521.1 + 49667 0.7 0.883797
Target:  5'- uGgAGAGggGC-CGGGCgagCGCGGCGc -3'
miRNA:   3'- gCgUCUUuaCGuGCCUGa--GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 50418 0.66 0.974816
Target:  5'- aCGCGcuc---CGCGGACUCGCGGUu- -3'
miRNA:   3'- -GCGUcuuuacGUGCCUGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 50534 0.66 0.977215
Target:  5'- cCGCGGGGuu-CGCGGcaguaUCGCaGGCGGa -3'
miRNA:   3'- -GCGUCUUuacGUGCCug---AGCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 52574 0.68 0.925521
Target:  5'- gGCAGAAGacgucGCGCGGGCa-GCuGGUGGc -3'
miRNA:   3'- gCGUCUUUa----CGUGCCUGagCG-CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 52673 0.67 0.956457
Target:  5'- gGCAGcAGcgGCACcGGCagCGuCGGCGGu -3'
miRNA:   3'- gCGUC-UUuaCGUGcCUGa-GC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 56273 0.66 0.969473
Target:  5'- gGCAGAGGU---UGGACUCGCaGGCc- -3'
miRNA:   3'- gCGUCUUUAcguGCCUGAGCG-CCGcc -5'
14086 5' -55.4 NC_003521.1 + 56784 0.69 0.896802
Target:  5'- aGCuGcuGUGCGCgaGGGCUCGCGaCGGc -3'
miRNA:   3'- gCGuCuuUACGUG--CCUGAGCGCcGCC- -5'
14086 5' -55.4 NC_003521.1 + 57288 0.67 0.963367
Target:  5'- aGCAGGucGGUGCGCGGcgACUgGUGGauaagcgaGGg -3'
miRNA:   3'- gCGUCU--UUACGUGCC--UGAgCGCCg-------CC- -5'
14086 5' -55.4 NC_003521.1 + 62233 0.73 0.70627
Target:  5'- uGCAGGAggGCGCccggcuGGACgCGCGGCuGGa -3'
miRNA:   3'- gCGUCUUuaCGUG------CCUGaGCGCCG-CC- -5'
14086 5' -55.4 NC_003521.1 + 63230 0.68 0.935459
Target:  5'- aGCGGAAcgGC-CGGAaccgGCGGCGc -3'
miRNA:   3'- gCGUCUUuaCGuGCCUgag-CGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 65703 0.66 0.979443
Target:  5'- gGCaAGAAGgacaGCGGcGC-CGCGGCGGc -3'
miRNA:   3'- gCG-UCUUUacg-UGCC-UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 66279 0.68 0.935459
Target:  5'- aGCAGGAggGagGCGGACUgGCGGgcacagccgaccCGGa -3'
miRNA:   3'- gCGUCUUuaCg-UGCCUGAgCGCC------------GCC- -5'
14086 5' -55.4 NC_003521.1 + 69730 0.66 0.969473
Target:  5'- aCGCGGuAAcgGCggGCGGGgagGCGGCGGu -3'
miRNA:   3'- -GCGUC-UUuaCG--UGCCUgagCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.