miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 69779 0.66 0.999398
Target:  5'- aCCACGG-CGACGAgGGAgcggcCGUcGAGAUg -3'
miRNA:   3'- -GGUGUCuGCUGCUgUCU-----GCAcCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 116885 0.66 0.999398
Target:  5'- gCGCGGcuGCGGCGGCGcgccGGCG-GGAGAc -3'
miRNA:   3'- gGUGUC--UGCUGCUGU----CUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 109869 0.66 0.999217
Target:  5'- -gACGGGCGGCGGCGGggccaccaguaacuGCGUGcGAc-- -3'
miRNA:   3'- ggUGUCUGCUGCUGUC--------------UGCAC-CUuua -5'
14089 3' -50.7 NC_003521.1 + 166852 0.66 0.999398
Target:  5'- aCGCAGGCGguggcGCGGCGGGCGcaGGucGUa -3'
miRNA:   3'- gGUGUCUGC-----UGCUGUCUGCa-CCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 57302 0.67 0.99812
Target:  5'- aCCugGGugGACGGCaaaauAGACGcucGGAc-- -3'
miRNA:   3'- -GGugUCugCUGCUG-----UCUGCa--CCUuua -5'
14089 3' -50.7 NC_003521.1 + 130447 0.67 0.998425
Target:  5'- aCUACGGGCGACGAUcGACGa------ -3'
miRNA:   3'- -GGUGUCUGCUGCUGuCUGCaccuuua -5'
14089 3' -50.7 NC_003521.1 + 233585 0.67 0.99812
Target:  5'- uUCGCGGAUGAUaguauGCAGAacgcCGUGGAGAc -3'
miRNA:   3'- -GGUGUCUGCUGc----UGUCU----GCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 38533 0.67 0.998425
Target:  5'- cCgGCGGAgcuCGACAGAgGUGGGGAc -3'
miRNA:   3'- -GgUGUCUgcuGCUGUCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 113574 0.67 0.998425
Target:  5'- gCCAUGGACGcCGACgAGccgcucuuCGUGGAGGa -3'
miRNA:   3'- -GGUGUCUGCuGCUG-UCu-------GCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 124146 0.67 0.99812
Target:  5'- uCCACcGACGACGggcaACAGcgGCGgcUGGAGAg -3'
miRNA:   3'- -GGUGuCUGCUGC----UGUC--UGC--ACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 161367 0.67 0.997767
Target:  5'- gCCGCGGGgcgugauguuCGACGGuCAGACG-GGAc-- -3'
miRNA:   3'- -GGUGUCU----------GCUGCU-GUCUGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 2250 0.67 0.998425
Target:  5'- uCCGCGauGACGAUGguACGGACG-GGAu-- -3'
miRNA:   3'- -GGUGU--CUGCUGC--UGUCUGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 238760 0.67 0.998425
Target:  5'- cCgGCGGAgcuCGACAGAgGUGGGGAc -3'
miRNA:   3'- -GgUGUCUgcuGCUGUCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 129245 0.67 0.998425
Target:  5'- gCCACGcGCGGC-ACcuGGAUGUGGAAGa -3'
miRNA:   3'- -GGUGUcUGCUGcUG--UCUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 193308 0.67 0.99812
Target:  5'- gCGCGGGgGugGugGGcACgGUGGggGUg -3'
miRNA:   3'- gGUGUCUgCugCugUC-UG-CACCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 239252 0.67 0.99812
Target:  5'- gCCGuCAGcaGCGACGGCGGGUGUGGc--- -3'
miRNA:   3'- -GGU-GUC--UGCUGCUGUCUGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 146795 0.67 0.99812
Target:  5'- -gACGGACGAUGAucCGGACcUGGAc-- -3'
miRNA:   3'- ggUGUCUGCUGCU--GUCUGcACCUuua -5'
14089 3' -50.7 NC_003521.1 + 131043 0.67 0.99812
Target:  5'- uCCugGGcgGCGGCGGCGGGCcucUGGAc-- -3'
miRNA:   3'- -GGugUC--UGCUGCUGUCUGc--ACCUuua -5'
14089 3' -50.7 NC_003521.1 + 45709 0.67 0.997767
Target:  5'- aCCGCGG-CGACGAU-GACGaGGAc-- -3'
miRNA:   3'- -GGUGUCuGCUGCUGuCUGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 8626 0.67 0.99812
Target:  5'- aCCACccGCGGgGGCccauGGCGUGGGAGg -3'
miRNA:   3'- -GGUGucUGCUgCUGu---CUGCACCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.