Results 21 - 40 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14089 | 3' | -50.7 | NC_003521.1 | + | 188668 | 0.66 | 0.998911 |
Target: 5'- cCCGCGGuaccguCGcUGACGGGCG-GGGGAUa -3' miRNA: 3'- -GGUGUCu-----GCuGCUGUCUGCaCCUUUA- -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 130857 | 0.66 | 0.998911 |
Target: 5'- aCCACggcgaGGACGAUGACgaGGAUGaGGAGu- -3' miRNA: 3'- -GGUG-----UCUGCUGCUG--UCUGCaCCUUua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 115476 | 0.66 | 0.999101 |
Target: 5'- gCGCGGACGA--ACAG-CGUGGGc-- -3' miRNA: 3'- gGUGUCUGCUgcUGUCuGCACCUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 219863 | 0.66 | 0.999101 |
Target: 5'- -gACGGuauCGACGACGG-CGUGGu--- -3' miRNA: 3'- ggUGUCu--GCUGCUGUCuGCACCuuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 135264 | 0.66 | 0.998687 |
Target: 5'- gCgGCGGACGcCGAC-GACGaGGAGGa -3' miRNA: 3'- -GgUGUCUGCuGCUGuCUGCaCCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 74244 | 0.66 | 0.999262 |
Target: 5'- -gACGGugGACGACGGGuuCcUGGAGu- -3' miRNA: 3'- ggUGUCugCUGCUGUCU--GcACCUUua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 236173 | 0.66 | 0.999101 |
Target: 5'- aCCuaGCGGACGAUGGguGGgGUGGcAGGa -3' miRNA: 3'- -GG--UGUCUGCUGCUguCUgCACC-UUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 94203 | 0.66 | 0.998911 |
Target: 5'- cCCuugaAGACGACGACGGGCucGUGauaGggGUg -3' miRNA: 3'- -GGug--UCUGCUGCUGUCUG--CAC---CuuUA- -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 197569 | 0.66 | 0.999398 |
Target: 5'- aCGCAgGAUGGCGAUgAGGCGgaUGGAGc- -3' miRNA: 3'- gGUGU-CUGCUGCUG-UCUGC--ACCUUua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 38226 | 0.66 | 0.999101 |
Target: 5'- gCGCAgGGCGGCcucGGCGGGCGgggcGGAGAc -3' miRNA: 3'- gGUGU-CUGCUG---CUGUCUGCa---CCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 76673 | 0.66 | 0.998687 |
Target: 5'- aCGCGGACuGCGA-GGACGcUGGggGa -3' miRNA: 3'- gGUGUCUGcUGCUgUCUGC-ACCuuUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 109869 | 0.66 | 0.999217 |
Target: 5'- -gACGGGCGGCGGCGGggccaccaguaacuGCGUGcGAc-- -3' miRNA: 3'- ggUGUCUGCUGCUGUC--------------UGCAC-CUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 85276 | 0.66 | 0.998911 |
Target: 5'- uCCGC--GCGcCGGCuGACGUGGAc-- -3' miRNA: 3'- -GGUGucUGCuGCUGuCUGCACCUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 5649 | 0.66 | 0.998687 |
Target: 5'- cCCACA--UGGCGGCGGAgGgUGGggGg -3' miRNA: 3'- -GGUGUcuGCUGCUGUCUgC-ACCuuUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 213727 | 0.66 | 0.998687 |
Target: 5'- cCCAgcCAGACGGCGccGCAGAaggcCGUGGu--- -3' miRNA: 3'- -GGU--GUCUGCUGC--UGUCU----GCACCuuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 192038 | 0.66 | 0.998687 |
Target: 5'- aCCGCcGGCGugcGCGGCAGACGcGGc--- -3' miRNA: 3'- -GGUGuCUGC---UGCUGUCUGCaCCuuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 178386 | 0.66 | 0.998687 |
Target: 5'- gCGCGcGCGGCGGgcuCAGACGaGGAGAUu -3' miRNA: 3'- gGUGUcUGCUGCU---GUCUGCaCCUUUA- -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 168491 | 0.66 | 0.998687 |
Target: 5'- aUCAUGGGCGGCGAgaCGGAgGcGGAGGa -3' miRNA: 3'- -GGUGUCUGCUGCU--GUCUgCaCCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 63869 | 0.66 | 0.998687 |
Target: 5'- aCACGGugGACGAgGcGGCGcgccgGGAGc- -3' miRNA: 3'- gGUGUCugCUGCUgU-CUGCa----CCUUua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 31028 | 0.66 | 0.998687 |
Target: 5'- aCGCGuucGugGugGugGGGgGUGGGAGg -3' miRNA: 3'- gGUGU---CugCugCugUCUgCACCUUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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