miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 178386 0.66 0.998687
Target:  5'- gCGCGcGCGGCGGgcuCAGACGaGGAGAUu -3'
miRNA:   3'- gGUGUcUGCUGCU---GUCUGCaCCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 5649 0.66 0.998687
Target:  5'- cCCACA--UGGCGGCGGAgGgUGGggGg -3'
miRNA:   3'- -GGUGUcuGCUGCUGUCUgC-ACCuuUa -5'
14089 3' -50.7 NC_003521.1 + 213727 0.66 0.998687
Target:  5'- cCCAgcCAGACGGCGccGCAGAaggcCGUGGu--- -3'
miRNA:   3'- -GGU--GUCUGCUGC--UGUCU----GCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 31028 0.66 0.998687
Target:  5'- aCGCGuucGugGugGugGGGgGUGGGAGg -3'
miRNA:   3'- gGUGU---CugCugCugUCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 63869 0.66 0.998687
Target:  5'- aCACGGugGACGAgGcGGCGcgccgGGAGc- -3'
miRNA:   3'- gGUGUCugCUGCUgU-CUGCa----CCUUua -5'
14089 3' -50.7 NC_003521.1 + 168491 0.66 0.998687
Target:  5'- aUCAUGGGCGGCGAgaCGGAgGcGGAGGa -3'
miRNA:   3'- -GGUGUCUGCUGCU--GUCUgCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 218672 0.66 0.998991
Target:  5'- uCCACcgucucccgguaagaGGGCGGCGGCgaAGGCGgaGGAGAc -3'
miRNA:   3'- -GGUG---------------UCUGCUGCUG--UCUGCa-CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 133228 0.66 0.999101
Target:  5'- uUCAgGGGCGAUGGCGGuCGaGGAc-- -3'
miRNA:   3'- -GGUgUCUGCUGCUGUCuGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 187883 0.66 0.999101
Target:  5'- aCCACcucGGGCGGC-ACGGGCGgcgGGGGc- -3'
miRNA:   3'- -GGUG---UCUGCUGcUGUCUGCa--CCUUua -5'
14089 3' -50.7 NC_003521.1 + 85276 0.66 0.998911
Target:  5'- uCCGC--GCGcCGGCuGACGUGGAc-- -3'
miRNA:   3'- -GGUGucUGCuGCUGuCUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 192038 0.66 0.998687
Target:  5'- aCCGCcGGCGugcGCGGCAGACGcGGc--- -3'
miRNA:   3'- -GGUGuCUGC---UGCUGUCUGCaCCuuua -5'
14089 3' -50.7 NC_003521.1 + 238454 0.66 0.999101
Target:  5'- gCGCAgGGCGGCcucGGCGGGCGgggcGGAGAc -3'
miRNA:   3'- gGUGU-CUGCUG---CUGUCUGCa---CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 130857 0.66 0.998911
Target:  5'- aCCACggcgaGGACGAUGACgaGGAUGaGGAGu- -3'
miRNA:   3'- -GGUG-----UCUGCUGCUG--UCUGCaCCUUua -5'
14089 3' -50.7 NC_003521.1 + 102446 0.66 0.999101
Target:  5'- gCCGCAGGCcGCGGCAGAUcucGAAGa -3'
miRNA:   3'- -GGUGUCUGcUGCUGUCUGcacCUUUa -5'
14089 3' -50.7 NC_003521.1 + 132802 0.66 0.999101
Target:  5'- gCCGCcuGACGcCGACgaAGGCGUGGu--- -3'
miRNA:   3'- -GGUGu-CUGCuGCUG--UCUGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 197569 0.66 0.999398
Target:  5'- aCGCAgGAUGGCGAUgAGGCGgaUGGAGc- -3'
miRNA:   3'- gGUGU-CUGCUGCUG-UCUGC--ACCUUua -5'
14089 3' -50.7 NC_003521.1 + 87638 0.66 0.999262
Target:  5'- gCCGCAGGCcuCGcACAGGC-UGGAGGc -3'
miRNA:   3'- -GGUGUCUGcuGC-UGUCUGcACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 39867 0.66 0.999262
Target:  5'- uCCAgAGACGGCGAuCGGGCGccguacaGGGu-- -3'
miRNA:   3'- -GGUgUCUGCUGCU-GUCUGCa------CCUuua -5'
14089 3' -50.7 NC_003521.1 + 77864 0.66 0.999262
Target:  5'- -gACGGGCGAUGGCGccGGCcucguaGUGGAAGUu -3'
miRNA:   3'- ggUGUCUGCUGCUGU--CUG------CACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 201350 0.66 0.999047
Target:  5'- uCCACgAGGCGGCGACGGGacacgaaccgcugcCGUccccGGGAGc -3'
miRNA:   3'- -GGUG-UCUGCUGCUGUCU--------------GCA----CCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.