miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 135507 1.09 0.016246
Target:  5'- cCCACAGACGACGACAGACGUGGAAAUg -3'
miRNA:   3'- -GGUGUCUGCUGCUGUCUGCACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 162335 0.87 0.315332
Target:  5'- cCCGCAGGCGGCGACugcGGGCGUGGGc-- -3'
miRNA:   3'- -GGUGUCUGCUGCUG---UCUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 48532 0.8 0.622703
Target:  5'- aCCGCGGACGGugcCGACGaacGGCGUGGAGAc -3'
miRNA:   3'- -GGUGUCUGCU---GCUGU---CUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 6985 0.79 0.653368
Target:  5'- aCCGCAGACGcACGACAcGGCgGUGGAu-- -3'
miRNA:   3'- -GGUGUCUGC-UGCUGU-CUG-CACCUuua -5'
14089 3' -50.7 NC_003521.1 + 196721 0.77 0.7627
Target:  5'- uUCACcGGCGGCGACGGugGUGGc--- -3'
miRNA:   3'- -GGUGuCUGCUGCUGUCugCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 237179 0.77 0.781433
Target:  5'- -gGCAGACGGCGGCGGcCGUGGc--- -3'
miRNA:   3'- ggUGUCUGCUGCUGUCuGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 123556 0.77 0.781433
Target:  5'- aCCACGgccGACGACGGCGGugGcGGGAu- -3'
miRNA:   3'- -GGUGU---CUGCUGCUGUCugCaCCUUua -5'
14089 3' -50.7 NC_003521.1 + 151254 0.75 0.842337
Target:  5'- gCCugGGACGGCGAC-GACGaGGAGc- -3'
miRNA:   3'- -GGugUCUGCUGCUGuCUGCaCCUUua -5'
14089 3' -50.7 NC_003521.1 + 209601 0.75 0.858138
Target:  5'- uUACGGugGACGGCuu-CGUGGAGAg -3'
miRNA:   3'- gGUGUCugCUGCUGucuGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 234838 0.74 0.893976
Target:  5'- aCGgGGACGGCGAUAG-CGUGGGc-- -3'
miRNA:   3'- gGUgUCUGCUGCUGUCuGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 59640 0.73 0.924127
Target:  5'- cUCGCAGGCGuugguGCGGCAGACGcuggcgcgccUGGAGGa -3'
miRNA:   3'- -GGUGUCUGC-----UGCUGUCUGC----------ACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 7147 0.73 0.924127
Target:  5'- aCGCGGAgGACGAC-GACGaGGAAGa -3'
miRNA:   3'- gGUGUCUgCUGCUGuCUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 110714 0.73 0.934527
Target:  5'- gCGCGGuACGACGGCAGGucccggGUGGAGAc -3'
miRNA:   3'- gGUGUC-UGCUGCUGUCUg-----CACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 113475 0.73 0.934527
Target:  5'- aCCACGGAgGGCGuGCAGAuCGUGGc--- -3'
miRNA:   3'- -GGUGUCUgCUGC-UGUCU-GCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 160433 0.73 0.934527
Target:  5'- aCCGCAGaacgccgaaggcGCGACGGCAcggcagaggauGAUGUGGGAGg -3'
miRNA:   3'- -GGUGUC------------UGCUGCUGU-----------CUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 56869 0.72 0.939369
Target:  5'- cCCACGGugGACauGGC-GAgGUGGAAAg -3'
miRNA:   3'- -GGUGUCugCUG--CUGuCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 39189 0.71 0.960081
Target:  5'- aCGCGcGACGACGACGGuCG-GGGAc- -3'
miRNA:   3'- gGUGU-CUGCUGCUGUCuGCaCCUUua -5'
14089 3' -50.7 NC_003521.1 + 209560 0.71 0.960081
Target:  5'- -gGguGGCGGCGACGGugGcGGggGUc -3'
miRNA:   3'- ggUguCUGCUGCUGUCugCaCCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 167536 0.71 0.963545
Target:  5'- aCgACAGACGGCGauagaGCGGACGUGucGGUa -3'
miRNA:   3'- -GgUGUCUGCUGC-----UGUCUGCACcuUUA- -5'
14089 3' -50.7 NC_003521.1 + 143134 0.71 0.963545
Target:  5'- aCCACcGACGGCGAgGGA-GUGGGc-- -3'
miRNA:   3'- -GGUGuCUGCUGCUgUCUgCACCUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.