miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 55749 0.7 0.98402
Target:  5'- gCGCGGGCGgcaGCGACAGGCGcGGc--- -3'
miRNA:   3'- gGUGUCUGC---UGCUGUCUGCaCCuuua -5'
14089 3' -50.7 NC_003521.1 + 32652 0.71 0.972668
Target:  5'- gCGCAGACGACGGCGGAaaguCGagcaaGGAGc- -3'
miRNA:   3'- gGUGUCUGCUGCUGUCU----GCa----CCUUua -5'
14089 3' -50.7 NC_003521.1 + 92020 0.71 0.972668
Target:  5'- gCGCGGcgGCGGCGGCGGugGguccGGggGUc -3'
miRNA:   3'- gGUGUC--UGCUGCUGUCugCa---CCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 217745 0.71 0.975305
Target:  5'- gCCACGGACGcagacACcACAGACGcgggUGGAGAg -3'
miRNA:   3'- -GGUGUCUGC-----UGcUGUCUGC----ACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 40526 0.7 0.977515
Target:  5'- uCCAgCAG-CGGCGACAGGucgggguUGUGGAAGc -3'
miRNA:   3'- -GGU-GUCuGCUGCUGUCU-------GCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 116453 0.7 0.977751
Target:  5'- aCCAC-GACGACGcgGCcGugGUGGGAc- -3'
miRNA:   3'- -GGUGuCUGCUGC--UGuCugCACCUUua -5'
14089 3' -50.7 NC_003521.1 + 168429 0.7 0.982101
Target:  5'- gCgGCAGggccGCGGCGGCGGGCGUGaAGAg -3'
miRNA:   3'- -GgUGUC----UGCUGCUGUCUGCACcUUUa -5'
14089 3' -50.7 NC_003521.1 + 70376 0.7 0.98402
Target:  5'- gCCGCAGGCGGCGGUAGAgGUagcGGGc-- -3'
miRNA:   3'- -GGUGUCUGCUGCUGUCUgCA---CCUuua -5'
14089 3' -50.7 NC_003521.1 + 18082 0.7 0.98402
Target:  5'- aCCugGaGACGACGGCcgcggGGACGgaGGAGGUa -3'
miRNA:   3'- -GGugU-CUGCUGCUG-----UCUGCa-CCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 99329 0.71 0.966794
Target:  5'- cCCAgGGAUGACGGguGAUGaGGAGGa -3'
miRNA:   3'- -GGUgUCUGCUGCUguCUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 143134 0.71 0.963545
Target:  5'- aCCACcGACGGCGAgGGA-GUGGGc-- -3'
miRNA:   3'- -GGUGuCUGCUGCUgUCUgCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 167536 0.71 0.963545
Target:  5'- aCgACAGACGGCGauagaGCGGACGUGucGGUa -3'
miRNA:   3'- -GgUGUCUGCUGC-----UGUCUGCACcuUUA- -5'
14089 3' -50.7 NC_003521.1 + 151254 0.75 0.842337
Target:  5'- gCCugGGACGGCGAC-GACGaGGAGc- -3'
miRNA:   3'- -GGugUCUGCUGCUGuCUGCaCCUUua -5'
14089 3' -50.7 NC_003521.1 + 59640 0.73 0.924127
Target:  5'- cUCGCAGGCGuugguGCGGCAGACGcuggcgcgccUGGAGGa -3'
miRNA:   3'- -GGUGUCUGC-----UGCUGUCUGC----------ACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 7147 0.73 0.924127
Target:  5'- aCGCGGAgGACGAC-GACGaGGAAGa -3'
miRNA:   3'- gGUGUCUgCUGCUGuCUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 160433 0.73 0.934527
Target:  5'- aCCGCAGaacgccgaaggcGCGACGGCAcggcagaggauGAUGUGGGAGg -3'
miRNA:   3'- -GGUGUC------------UGCUGCUGU-----------CUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 110714 0.73 0.934527
Target:  5'- gCGCGGuACGACGGCAGGucccggGUGGAGAc -3'
miRNA:   3'- gGUGUC-UGCUGCUGUCUg-----CACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 56869 0.72 0.939369
Target:  5'- cCCACGGugGACauGGC-GAgGUGGAAAg -3'
miRNA:   3'- -GGUGUCugCUG--CUGuCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 209560 0.71 0.960081
Target:  5'- -gGguGGCGGCGACGGugGcGGggGUc -3'
miRNA:   3'- ggUguCUGCUGCUGUCugCaCCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 39189 0.71 0.960081
Target:  5'- aCGCGcGACGACGACGGuCG-GGGAc- -3'
miRNA:   3'- gGUGU-CUGCUGCUGUCuGCaCCUUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.