miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 135507 1.09 0.016246
Target:  5'- cCCACAGACGACGACAGACGUGGAAAUg -3'
miRNA:   3'- -GGUGUCUGCUGCUGUCUGCACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 200445 0.7 0.980014
Target:  5'- gCCAC-GACGcCGACAu-CGUGGAGAa -3'
miRNA:   3'- -GGUGuCUGCuGCUGUcuGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 77234 0.7 0.983835
Target:  5'- cCUACGGGgGACGACAGggcacacACGgggGGAAGg -3'
miRNA:   3'- -GGUGUCUgCUGCUGUC-------UGCa--CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 197569 0.66 0.999398
Target:  5'- aCGCAgGAUGGCGAUgAGGCGgaUGGAGc- -3'
miRNA:   3'- gGUGU-CUGCUGCUG-UCUGC--ACCUUua -5'
14089 3' -50.7 NC_003521.1 + 237179 0.77 0.781433
Target:  5'- -gGCAGACGGCGGCGGcCGUGGc--- -3'
miRNA:   3'- ggUGUCUGCUGCUGUCuGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 123556 0.77 0.781433
Target:  5'- aCCACGgccGACGACGGCGGugGcGGGAu- -3'
miRNA:   3'- -GGUGU---CUGCUGCUGUCugCaCCUUua -5'
14089 3' -50.7 NC_003521.1 + 234838 0.74 0.893976
Target:  5'- aCGgGGACGGCGAUAG-CGUGGGc-- -3'
miRNA:   3'- gGUgUCUGCUGCUGUCuGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 113475 0.73 0.934527
Target:  5'- aCCACGGAgGGCGuGCAGAuCGUGGc--- -3'
miRNA:   3'- -GGUGUCUgCUGC-UGUCU-GCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 151529 0.71 0.969833
Target:  5'- gCCAgAGGCGGCG-CGGACGcGGGu-- -3'
miRNA:   3'- -GGUgUCUGCUGCuGUCUGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 27985 0.7 0.979354
Target:  5'- cCCcCAGGaucuucaaccccucCGAUGaACAGACGUGGAAGg -3'
miRNA:   3'- -GGuGUCU--------------GCUGC-UGUCUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 195427 0.71 0.973746
Target:  5'- gCCACGGcCGACGAagaggcggccgauGACGUGGAu-- -3'
miRNA:   3'- -GGUGUCuGCUGCUgu-----------CUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 190815 0.71 0.969833
Target:  5'- gCUACAGGagcCGACGACAGGCGcGGu--- -3'
miRNA:   3'- -GGUGUCU---GCUGCUGUCUGCaCCuuua -5'
14089 3' -50.7 NC_003521.1 + 162335 0.87 0.315332
Target:  5'- cCCGCAGGCGGCGACugcGGGCGUGGGc-- -3'
miRNA:   3'- -GGUGUCUGCUGCUG---UCUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 155388 0.71 0.975305
Target:  5'- gCGCGGACGACGAgGccGGCG-GGggGc -3'
miRNA:   3'- gGUGUCUGCUGCUgU--CUGCaCCuuUa -5'
14089 3' -50.7 NC_003521.1 + 48532 0.8 0.622703
Target:  5'- aCCGCGGACGGugcCGACGaacGGCGUGGAGAc -3'
miRNA:   3'- -GGUGUCUGCU---GCUGU---CUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 48691 0.71 0.966794
Target:  5'- uCCGCGGACGcCGACGGAgccgacgaggcCG-GGAGAg -3'
miRNA:   3'- -GGUGUCUGCuGCUGUCU-----------GCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 106114 0.7 0.977751
Target:  5'- gCACGGGCGugG-CGGcCGUGGGc-- -3'
miRNA:   3'- gGUGUCUGCugCuGUCuGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 169440 0.7 0.982101
Target:  5'- aCGCGGACGACGGCGucGGCGgcggcGGGu-- -3'
miRNA:   3'- gGUGUCUGCUGCUGU--CUGCa----CCUuua -5'
14089 3' -50.7 NC_003521.1 + 6985 0.79 0.653368
Target:  5'- aCCGCAGACGcACGACAcGGCgGUGGAu-- -3'
miRNA:   3'- -GGUGUCUGC-UGCUGU-CUG-CACCUuua -5'
14089 3' -50.7 NC_003521.1 + 209601 0.75 0.858138
Target:  5'- uUACGGugGACGGCuu-CGUGGAGAg -3'
miRNA:   3'- gGUGUCugCUGCUGucuGCACCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.