miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 1122 0.66 0.999047
Target:  5'- uCCACgAGGCGGCGACGGGacacgaaccgcugcCGUccccGGGAGc -3'
miRNA:   3'- -GGUG-UCUGCUGCUGUCU--------------GCA----CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 2250 0.67 0.998425
Target:  5'- uCCGCGauGACGAUGguACGGACG-GGAu-- -3'
miRNA:   3'- -GGUGU--CUGCUGC--UGUCUGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 5649 0.66 0.998687
Target:  5'- cCCACA--UGGCGGCGGAgGgUGGggGg -3'
miRNA:   3'- -GGUGUcuGCUGCUGUCUgC-ACCuuUa -5'
14089 3' -50.7 NC_003521.1 + 6227 0.67 0.99736
Target:  5'- cCCGCAGuCGcACcACAGcuCGUGGGAGUa -3'
miRNA:   3'- -GGUGUCuGC-UGcUGUCu-GCACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 6985 0.79 0.653368
Target:  5'- aCCGCAGACGcACGACAcGGCgGUGGAu-- -3'
miRNA:   3'- -GGUGUCUGC-UGCUGU-CUG-CACCUuua -5'
14089 3' -50.7 NC_003521.1 + 7147 0.73 0.924127
Target:  5'- aCGCGGAgGACGAC-GACGaGGAAGa -3'
miRNA:   3'- gGUGUCUgCUGCUGuCUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 7438 0.7 0.986439
Target:  5'- aUCACGGACG-CGGCgcacagcaccacgcgGGACGUGcGAAAa -3'
miRNA:   3'- -GGUGUCUGCuGCUG---------------UCUGCAC-CUUUa -5'
14089 3' -50.7 NC_003521.1 + 7614 0.66 0.999262
Target:  5'- gUACGGugG-CGGCGGACuGUcGGGAAc -3'
miRNA:   3'- gGUGUCugCuGCUGUCUG-CA-CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 8626 0.67 0.99812
Target:  5'- aCCACccGCGGgGGCccauGGCGUGGGAGg -3'
miRNA:   3'- -GGUGucUGCUgCUGu---CUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 9160 0.69 0.992145
Target:  5'- aCGCAGACcACGGCGagcaagacucgcauGACGUGGGu-- -3'
miRNA:   3'- gGUGUCUGcUGCUGU--------------CUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 13987 0.69 0.992457
Target:  5'- gCC-CGGcGCGGCGGCGGGCGaGGAc-- -3'
miRNA:   3'- -GGuGUC-UGCUGCUGUCUGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 16919 0.69 0.987385
Target:  5'- -gGCGGACGAUGA-AGACGaGGAAGa -3'
miRNA:   3'- ggUGUCUGCUGCUgUCUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 18082 0.7 0.98402
Target:  5'- aCCugGaGACGACGGCcgcggGGACGgaGGAGGUa -3'
miRNA:   3'- -GGugU-CUGCUGCUG-----UCUGCa-CCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 18727 0.67 0.996893
Target:  5'- gCCGCuGGCGGCGGC-GAuCGUGGc--- -3'
miRNA:   3'- -GGUGuCUGCUGCUGuCU-GCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 27982 0.66 0.999398
Target:  5'- cUCACGGccACGGCGGCAG-CGUGa---- -3'
miRNA:   3'- -GGUGUC--UGCUGCUGUCuGCACcuuua -5'
14089 3' -50.7 NC_003521.1 + 27985 0.7 0.979354
Target:  5'- cCCcCAGGaucuucaaccccucCGAUGaACAGACGUGGAAGg -3'
miRNA:   3'- -GGuGUCU--------------GCUGC-UGUCUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 31028 0.66 0.998687
Target:  5'- aCGCGuucGugGugGugGGGgGUGGGAGg -3'
miRNA:   3'- gGUGU---CugCugCugUCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 31302 0.68 0.996006
Target:  5'- aCCGCGGcaGCGGCGACGGucaccgugaccccccACGaGGAAAc -3'
miRNA:   3'- -GGUGUC--UGCUGCUGUC---------------UGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 32652 0.71 0.972668
Target:  5'- gCGCAGACGACGGCGGAaaguCGagcaaGGAGc- -3'
miRNA:   3'- gGUGUCUGCUGCUGUCU----GCa----CCUUua -5'
14089 3' -50.7 NC_003521.1 + 33846 0.68 0.995755
Target:  5'- cCUGCGGuCGACGAUAGAg--GGAGAUa -3'
miRNA:   3'- -GGUGUCuGCUGCUGUCUgcaCCUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.