miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 239252 0.67 0.99812
Target:  5'- gCCGuCAGcaGCGACGGCGGGUGUGGc--- -3'
miRNA:   3'- -GGU-GUC--UGCUGCUGUCUGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 238760 0.67 0.998425
Target:  5'- cCgGCGGAgcuCGACAGAgGUGGGGAc -3'
miRNA:   3'- -GgUGUCUgcuGCUGUCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 238454 0.66 0.999101
Target:  5'- gCGCAgGGCGGCcucGGCGGGCGgggcGGAGAc -3'
miRNA:   3'- gGUGU-CUGCUG---CUGUCUGCa---CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 237179 0.77 0.781433
Target:  5'- -gGCAGACGGCGGCGGcCGUGGc--- -3'
miRNA:   3'- ggUGUCUGCUGCUGUCuGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 236173 0.66 0.999101
Target:  5'- aCCuaGCGGACGAUGGguGGgGUGGcAGGa -3'
miRNA:   3'- -GG--UGUCUGCUGCUguCUgCACC-UUUa -5'
14089 3' -50.7 NC_003521.1 + 234838 0.74 0.893976
Target:  5'- aCGgGGACGGCGAUAG-CGUGGGc-- -3'
miRNA:   3'- gGUgUCUGCUGCUGUCuGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 233585 0.67 0.99812
Target:  5'- uUCGCGGAUGAUaguauGCAGAacgcCGUGGAGAc -3'
miRNA:   3'- -GGUGUCUGCUGc----UGUCU----GCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 229056 0.67 0.996893
Target:  5'- cCCACgaGGACGAaGGCAGucacccaggcgGCGUGGAu-- -3'
miRNA:   3'- -GGUG--UCUGCUgCUGUC-----------UGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 220500 0.71 0.969833
Target:  5'- -aGCAGAUGGacaGACAGAugccCGUGGAGGUc -3'
miRNA:   3'- ggUGUCUGCUg--CUGUCU----GCACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 219863 0.66 0.999101
Target:  5'- -gACGGuauCGACGACGG-CGUGGu--- -3'
miRNA:   3'- ggUGUCu--GCUGCUGUCuGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 218672 0.66 0.998991
Target:  5'- uCCACcgucucccgguaagaGGGCGGCGGCgaAGGCGgaGGAGAc -3'
miRNA:   3'- -GGUG---------------UCUGCUGCUG--UCUGCa-CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 217745 0.71 0.975305
Target:  5'- gCCACGGACGcagacACcACAGACGcgggUGGAGAg -3'
miRNA:   3'- -GGUGUCUGC-----UGcUGUCUGC----ACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 217008 0.7 0.985779
Target:  5'- gCCACgAGACGuCGAagAGACG-GGAGGUg -3'
miRNA:   3'- -GGUG-UCUGCuGCUg-UCUGCaCCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 216226 0.69 0.990175
Target:  5'- cCCugAGGUGACGcguucUAGACGUGGAAc- -3'
miRNA:   3'- -GGugUCUGCUGCu----GUCUGCACCUUua -5'
14089 3' -50.7 NC_003521.1 + 213727 0.66 0.998687
Target:  5'- cCCAgcCAGACGGCGccGCAGAaggcCGUGGu--- -3'
miRNA:   3'- -GGU--GUCUGCUGC--UGUCU----GCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 212887 0.69 0.992457
Target:  5'- aCGCGGGCGACGGgGGuguCgGUGGAc-- -3'
miRNA:   3'- gGUGUCUGCUGCUgUCu--G-CACCUuua -5'
14089 3' -50.7 NC_003521.1 + 210415 0.67 0.996893
Target:  5'- aCCGCAG-CGugGuCGG-CGUGGGc-- -3'
miRNA:   3'- -GGUGUCuGCugCuGUCuGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 209601 0.75 0.858138
Target:  5'- uUACGGugGACGGCuu-CGUGGAGAg -3'
miRNA:   3'- gGUGUCugCUGCUGucuGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 209560 0.71 0.960081
Target:  5'- -gGguGGCGGCGACGGugGcGGggGUc -3'
miRNA:   3'- ggUguCUGCUGCUGUCugCaCCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 207487 0.7 0.985779
Target:  5'- aCUAC-GugGACGA-GGugGUGGAGAg -3'
miRNA:   3'- -GGUGuCugCUGCUgUCugCACCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.