miRNA display CGI


Results 21 - 40 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 36004 0.69 0.991376
Target:  5'- -aGC-GACGGCGACGGAgGUGGc--- -3'
miRNA:   3'- ggUGuCUGCUGCUGUCUgCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 36766 0.7 0.98561
Target:  5'- uCCAaGGACGcGCGuggccugGCGGGCGUGGAGGa -3'
miRNA:   3'- -GGUgUCUGC-UGC-------UGUCUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 37213 0.69 0.987385
Target:  5'- aCCGCGGuuaGGCGGCcucGGGgGUGGAGAc -3'
miRNA:   3'- -GGUGUCug-CUGCUG---UCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 38196 0.67 0.997767
Target:  5'- -gACAGGCGACGauguaGCGGACGaUGGc--- -3'
miRNA:   3'- ggUGUCUGCUGC-----UGUCUGC-ACCuuua -5'
14089 3' -50.7 NC_003521.1 + 38226 0.66 0.999101
Target:  5'- gCGCAgGGCGGCcucGGCGGGCGgggcGGAGAc -3'
miRNA:   3'- gGUGU-CUGCUG---CUGUCUGCa---CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 38533 0.67 0.998425
Target:  5'- cCgGCGGAgcuCGACAGAgGUGGGGAc -3'
miRNA:   3'- -GgUGUCUgcuGCUGUCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 39024 0.67 0.99812
Target:  5'- gCCGuCAGcaGCGACGGCGGGUGUGGc--- -3'
miRNA:   3'- -GGU-GUC--UGCUGCUGUCUGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 39189 0.71 0.960081
Target:  5'- aCGCGcGACGACGACGGuCG-GGGAc- -3'
miRNA:   3'- gGUGU-CUGCUGCUGUCuGCaCCUUua -5'
14089 3' -50.7 NC_003521.1 + 39867 0.66 0.999262
Target:  5'- uCCAgAGACGGCGAuCGGGCGccguacaGGGu-- -3'
miRNA:   3'- -GGUgUCUGCUGCU-GUCUGCa------CCUuua -5'
14089 3' -50.7 NC_003521.1 + 40526 0.7 0.977515
Target:  5'- uCCAgCAG-CGGCGACAGGucgggguUGUGGAAGc -3'
miRNA:   3'- -GGU-GUCuGCUGCUGUCU-------GCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 41592 0.68 0.995755
Target:  5'- aCCACGGACu-CGACGGAguaUGGGAAUu -3'
miRNA:   3'- -GGUGUCUGcuGCUGUCUgc-ACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 43132 0.66 0.999262
Target:  5'- gCGCu--CGGCGcUGGGCGUGGAGGUg -3'
miRNA:   3'- gGUGucuGCUGCuGUCUGCACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 44932 0.69 0.991376
Target:  5'- aCGaGGACGACGAagaGGACGgGGAGGa -3'
miRNA:   3'- gGUgUCUGCUGCUg--UCUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 45709 0.67 0.997767
Target:  5'- aCCGCGG-CGACGAU-GACGaGGAc-- -3'
miRNA:   3'- -GGUGUCuGCUGCUGuCUGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 46040 0.67 0.997767
Target:  5'- gCCACAuGGCGGCaGC-GACGUGaGGAAg -3'
miRNA:   3'- -GGUGU-CUGCUGcUGuCUGCAC-CUUUa -5'
14089 3' -50.7 NC_003521.1 + 48532 0.8 0.622703
Target:  5'- aCCGCGGACGGugcCGACGaacGGCGUGGAGAc -3'
miRNA:   3'- -GGUGUCUGCU---GCUGU---CUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 48691 0.71 0.966794
Target:  5'- uCCGCGGACGcCGACGGAgccgacgaggcCG-GGAGAg -3'
miRNA:   3'- -GGUGUCUGCuGCUGUCU-----------GCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 49620 0.68 0.995069
Target:  5'- aCGCGGAggacaCGGCGACgaGGACGagGGAGAc -3'
miRNA:   3'- gGUGUCU-----GCUGCUG--UCUGCa-CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 50494 0.68 0.993428
Target:  5'- gCCACAG-CGuguCGGCGG-CGgUGGAGAUg -3'
miRNA:   3'- -GGUGUCuGCu--GCUGUCuGC-ACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 50553 0.67 0.99812
Target:  5'- aUCGCAGGCGG----AGACGUGGAu-- -3'
miRNA:   3'- -GGUGUCUGCUgcugUCUGCACCUuua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.