miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 48691 0.71 0.966794
Target:  5'- uCCGCGGACGcCGACGGAgccgacgaggcCG-GGAGAg -3'
miRNA:   3'- -GGUGUCUGCuGCUGUCU-----------GCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 99329 0.71 0.966794
Target:  5'- cCCAgGGAUGACGGguGAUGaGGAGGa -3'
miRNA:   3'- -GGUgUCUGCUGCUguCUGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 190815 0.71 0.969833
Target:  5'- gCUACAGGagcCGACGACAGGCGcGGu--- -3'
miRNA:   3'- -GGUGUCU---GCUGCUGUCUGCaCCuuua -5'
14089 3' -50.7 NC_003521.1 + 151529 0.71 0.969833
Target:  5'- gCCAgAGGCGGCG-CGGACGcGGGu-- -3'
miRNA:   3'- -GGUgUCUGCUGCuGUCUGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 220500 0.71 0.969833
Target:  5'- -aGCAGAUGGacaGACAGAugccCGUGGAGGUc -3'
miRNA:   3'- ggUGUCUGCUg--CUGUCU----GCACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 92020 0.71 0.972668
Target:  5'- gCGCGGcgGCGGCGGCGGugGguccGGggGUc -3'
miRNA:   3'- gGUGUC--UGCUGCUGUCugCa---CCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 32652 0.71 0.972668
Target:  5'- gCGCAGACGACGGCGGAaaguCGagcaaGGAGc- -3'
miRNA:   3'- gGUGUCUGCUGCUGUCU----GCa----CCUUua -5'
14089 3' -50.7 NC_003521.1 + 195427 0.71 0.973746
Target:  5'- gCCACGGcCGACGAagaggcggccgauGACGUGGAu-- -3'
miRNA:   3'- -GGUGUCuGCUGCUgu-----------CUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 217745 0.71 0.975305
Target:  5'- gCCACGGACGcagacACcACAGACGcgggUGGAGAg -3'
miRNA:   3'- -GGUGUCUGC-----UGcUGUCUGC----ACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 155388 0.71 0.975305
Target:  5'- gCGCGGACGACGAgGccGGCG-GGggGc -3'
miRNA:   3'- gGUGUCUGCUGCUgU--CUGCaCCuuUa -5'
14089 3' -50.7 NC_003521.1 + 40526 0.7 0.977515
Target:  5'- uCCAgCAG-CGGCGACAGGucgggguUGUGGAAGc -3'
miRNA:   3'- -GGU-GUCuGCUGCUGUCU-------GCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 106114 0.7 0.977751
Target:  5'- gCACGGGCGugG-CGGcCGUGGGc-- -3'
miRNA:   3'- gGUGUCUGCugCuGUCuGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 116453 0.7 0.977751
Target:  5'- aCCAC-GACGACGcgGCcGugGUGGGAc- -3'
miRNA:   3'- -GGUGuCUGCUGC--UGuCugCACCUUua -5'
14089 3' -50.7 NC_003521.1 + 27985 0.7 0.979354
Target:  5'- cCCcCAGGaucuucaaccccucCGAUGaACAGACGUGGAAGg -3'
miRNA:   3'- -GGuGUCU--------------GCUGC-UGUCUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 200445 0.7 0.980014
Target:  5'- gCCAC-GACGcCGACAu-CGUGGAGAa -3'
miRNA:   3'- -GGUGuCUGCuGCUGUcuGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 168429 0.7 0.982101
Target:  5'- gCgGCAGggccGCGGCGGCGGGCGUGaAGAg -3'
miRNA:   3'- -GgUGUC----UGCUGCUGUCUGCACcUUUa -5'
14089 3' -50.7 NC_003521.1 + 169440 0.7 0.982101
Target:  5'- aCGCGGACGACGGCGucGGCGgcggcGGGu-- -3'
miRNA:   3'- gGUGUCUGCUGCUGU--CUGCa----CCUuua -5'
14089 3' -50.7 NC_003521.1 + 77234 0.7 0.983835
Target:  5'- cCUACGGGgGACGACAGggcacacACGgggGGAAGg -3'
miRNA:   3'- -GGUGUCUgCUGCUGUC-------UGCa--CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 18082 0.7 0.98402
Target:  5'- aCCugGaGACGACGGCcgcggGGACGgaGGAGGUa -3'
miRNA:   3'- -GGugU-CUGCUGCUG-----UCUGCa-CCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 55749 0.7 0.98402
Target:  5'- gCGCGGGCGgcaGCGACAGGCGcGGc--- -3'
miRNA:   3'- gGUGUCUGC---UGCUGUCUGCaCCuuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.