miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 163217 0.66 0.999101
Target:  5'- gUCACGGGCG-CGcccGguGACGUGGGu-- -3'
miRNA:   3'- -GGUGUCUGCuGC---UguCUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 102446 0.66 0.999101
Target:  5'- gCCGCAGGCcGCGGCAGAUcucGAAGa -3'
miRNA:   3'- -GGUGUCUGcUGCUGUCUGcacCUUUa -5'
14089 3' -50.7 NC_003521.1 + 219863 0.66 0.999101
Target:  5'- -gACGGuauCGACGACGG-CGUGGu--- -3'
miRNA:   3'- ggUGUCu--GCUGCUGUCuGCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 236173 0.66 0.999101
Target:  5'- aCCuaGCGGACGAUGGguGGgGUGGcAGGa -3'
miRNA:   3'- -GG--UGUCUGCUGCUguCUgCACC-UUUa -5'
14089 3' -50.7 NC_003521.1 + 115476 0.66 0.999101
Target:  5'- gCGCGGACGA--ACAG-CGUGGGc-- -3'
miRNA:   3'- gGUGUCUGCUgcUGUCuGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 38226 0.66 0.999101
Target:  5'- gCGCAgGGCGGCcucGGCGGGCGgggcGGAGAc -3'
miRNA:   3'- gGUGU-CUGCUG---CUGUCUGCa---CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 1122 0.66 0.999047
Target:  5'- uCCACgAGGCGGCGACGGGacacgaaccgcugcCGUccccGGGAGc -3'
miRNA:   3'- -GGUG-UCUGCUGCUGUCU--------------GCA----CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 201350 0.66 0.999047
Target:  5'- uCCACgAGGCGGCGACGGGacacgaaccgcugcCGUccccGGGAGc -3'
miRNA:   3'- -GGUG-UCUGCUGCUGUCU--------------GCA----CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 218672 0.66 0.998991
Target:  5'- uCCACcgucucccgguaagaGGGCGGCGGCgaAGGCGgaGGAGAc -3'
miRNA:   3'- -GGUG---------------UCUGCUGCUG--UCUGCa-CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 85276 0.66 0.998911
Target:  5'- uCCGC--GCGcCGGCuGACGUGGAc-- -3'
miRNA:   3'- -GGUGucUGCuGCUGuCUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 94203 0.66 0.998911
Target:  5'- cCCuugaAGACGACGACGGGCucGUGauaGggGUg -3'
miRNA:   3'- -GGug--UCUGCUGCUGUCUG--CAC---CuuUA- -5'
14089 3' -50.7 NC_003521.1 + 130857 0.66 0.998911
Target:  5'- aCCACggcgaGGACGAUGACgaGGAUGaGGAGu- -3'
miRNA:   3'- -GGUG-----UCUGCUGCUG--UCUGCaCCUUua -5'
14089 3' -50.7 NC_003521.1 + 188668 0.66 0.998911
Target:  5'- cCCGCGGuaccguCGcUGACGGGCG-GGGGAUa -3'
miRNA:   3'- -GGUGUCu-----GCuGCUGUCUGCaCCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 166070 0.66 0.998687
Target:  5'- gCCACGucGACGGCGACgccAGuCG-GGAGAc -3'
miRNA:   3'- -GGUGU--CUGCUGCUG---UCuGCaCCUUUa -5'
14089 3' -50.7 NC_003521.1 + 168387 0.66 0.998687
Target:  5'- gUCGC-GACGACGACGG-CGaGGAc-- -3'
miRNA:   3'- -GGUGuCUGCUGCUGUCuGCaCCUuua -5'
14089 3' -50.7 NC_003521.1 + 63869 0.66 0.998687
Target:  5'- aCACGGugGACGAgGcGGCGcgccgGGAGc- -3'
miRNA:   3'- gGUGUCugCUGCUgU-CUGCa----CCUUua -5'
14089 3' -50.7 NC_003521.1 + 5649 0.66 0.998687
Target:  5'- cCCACA--UGGCGGCGGAgGgUGGggGg -3'
miRNA:   3'- -GGUGUcuGCUGCUGUCUgC-ACCuuUa -5'
14089 3' -50.7 NC_003521.1 + 31028 0.66 0.998687
Target:  5'- aCGCGuucGugGugGugGGGgGUGGGAGg -3'
miRNA:   3'- gGUGU---CugCugCugUCUgCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 178386 0.66 0.998687
Target:  5'- gCGCGcGCGGCGGgcuCAGACGaGGAGAUu -3'
miRNA:   3'- gGUGUcUGCUGCU---GUCUGCaCCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 168491 0.66 0.998687
Target:  5'- aUCAUGGGCGGCGAgaCGGAgGcGGAGGa -3'
miRNA:   3'- -GGUGUCUGCUGCU--GUCUgCaCCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.