Results 41 - 60 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14089 | 3' | -50.7 | NC_003521.1 | + | 76673 | 0.66 | 0.998687 |
Target: 5'- aCGCGGACuGCGA-GGACGcUGGggGa -3' miRNA: 3'- gGUGUCUGcUGCUgUCUGC-ACCuuUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 168387 | 0.66 | 0.998687 |
Target: 5'- gUCGC-GACGACGACGG-CGaGGAc-- -3' miRNA: 3'- -GGUGuCUGCUGCUGUCuGCaCCUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 135264 | 0.66 | 0.998687 |
Target: 5'- gCgGCGGACGcCGAC-GACGaGGAGGa -3' miRNA: 3'- -GgUGUCUGCuGCUGuCUGCaCCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 166070 | 0.66 | 0.998687 |
Target: 5'- gCCACGucGACGGCGACgccAGuCG-GGAGAc -3' miRNA: 3'- -GGUGU--CUGCUGCUG---UCuGCaCCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 113574 | 0.67 | 0.998425 |
Target: 5'- gCCAUGGACGcCGACgAGccgcucuuCGUGGAGGa -3' miRNA: 3'- -GGUGUCUGCuGCUG-UCu-------GCACCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 130447 | 0.67 | 0.998425 |
Target: 5'- aCUACGGGCGACGAUcGACGa------ -3' miRNA: 3'- -GGUGUCUGCUGCUGuCUGCaccuuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 2250 | 0.67 | 0.998425 |
Target: 5'- uCCGCGauGACGAUGguACGGACG-GGAu-- -3' miRNA: 3'- -GGUGU--CUGCUGC--UGUCUGCaCCUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 238760 | 0.67 | 0.998425 |
Target: 5'- cCgGCGGAgcuCGACAGAgGUGGGGAc -3' miRNA: 3'- -GgUGUCUgcuGCUGUCUgCACCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 129245 | 0.67 | 0.998425 |
Target: 5'- gCCACGcGCGGC-ACcuGGAUGUGGAAGa -3' miRNA: 3'- -GGUGUcUGCUGcUG--UCUGCACCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 38533 | 0.67 | 0.998425 |
Target: 5'- cCgGCGGAgcuCGACAGAgGUGGGGAc -3' miRNA: 3'- -GgUGUCUgcuGCUGUCUgCACCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 193308 | 0.67 | 0.99812 |
Target: 5'- gCGCGGGgGugGugGGcACgGUGGggGUg -3' miRNA: 3'- gGUGUCUgCugCugUC-UG-CACCuuUA- -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 233585 | 0.67 | 0.99812 |
Target: 5'- uUCGCGGAUGAUaguauGCAGAacgcCGUGGAGAc -3' miRNA: 3'- -GGUGUCUGCUGc----UGUCU----GCACCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 39024 | 0.67 | 0.99812 |
Target: 5'- gCCGuCAGcaGCGACGGCGGGUGUGGc--- -3' miRNA: 3'- -GGU-GUC--UGCUGCUGUCUGCACCuuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 57302 | 0.67 | 0.99812 |
Target: 5'- aCCugGGugGACGGCaaaauAGACGcucGGAc-- -3' miRNA: 3'- -GGugUCugCUGCUG-----UCUGCa--CCUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 50553 | 0.67 | 0.99812 |
Target: 5'- aUCGCAGGCGG----AGACGUGGAu-- -3' miRNA: 3'- -GGUGUCUGCUgcugUCUGCACCUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 131043 | 0.67 | 0.99812 |
Target: 5'- uCCugGGcgGCGGCGGCGGGCcucUGGAc-- -3' miRNA: 3'- -GGugUC--UGCUGCUGUCUGc--ACCUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 8626 | 0.67 | 0.99812 |
Target: 5'- aCCACccGCGGgGGCccauGGCGUGGGAGg -3' miRNA: 3'- -GGUGucUGCUgCUGu---CUGCACCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 124146 | 0.67 | 0.99812 |
Target: 5'- uCCACcGACGACGggcaACAGcgGCGgcUGGAGAg -3' miRNA: 3'- -GGUGuCUGCUGC----UGUC--UGC--ACCUUUa -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 146795 | 0.67 | 0.99812 |
Target: 5'- -gACGGACGAUGAucCGGACcUGGAc-- -3' miRNA: 3'- ggUGUCUGCUGCU--GUCUGcACCUuua -5' |
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14089 | 3' | -50.7 | NC_003521.1 | + | 239252 | 0.67 | 0.99812 |
Target: 5'- gCCGuCAGcaGCGACGGCGGGUGUGGc--- -3' miRNA: 3'- -GGU-GUC--UGCUGCUGUCUGCACCuuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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