miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 3' -53.5 NC_003521.1 + 195534 0.67 0.96047
Target:  5'- gUUCAUgaUGUUcaugcagAAGCacGGUGCCAGugGCAg -3'
miRNA:   3'- -AAGUA--GCAG-------UUCG--UCACGGUCugCGU- -5'
14091 3' -53.5 NC_003521.1 + 202384 0.67 0.962231
Target:  5'- uUUCAUCGUCAcccGUgucacccgcgcccccGGUgaaaaGCCAGGCGCAa -3'
miRNA:   3'- -AAGUAGCAGUu--CG---------------UCA-----CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 78219 0.67 0.967187
Target:  5'- cUCGUCGgaggcugUCGAGCgAGUGCCAc-CGCAg -3'
miRNA:   3'- aAGUAGC-------AGUUCG-UCACGGUcuGCGU- -5'
14091 3' -53.5 NC_003521.1 + 108030 0.67 0.973325
Target:  5'- gUCggCGUCAGGCGGcgGCgGgauGACGCGa -3'
miRNA:   3'- aAGuaGCAGUUCGUCa-CGgU---CUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 114131 0.67 0.973325
Target:  5'- aUCAUgGUCGAGUAcUGCCuGGCGg- -3'
miRNA:   3'- aAGUAgCAGUUCGUcACGGuCUGCgu -5'
14091 3' -53.5 NC_003521.1 + 169452 0.66 0.975935
Target:  5'- -gCGUCGgCGgcGGCGGguucgucGCCAGGCGCGu -3'
miRNA:   3'- aaGUAGCaGU--UCGUCa------CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 185050 0.66 0.975935
Target:  5'- gUUCAUCuUCGAGCuGUaccGCCGGcCGCGc -3'
miRNA:   3'- -AAGUAGcAGUUCGuCA---CGGUCuGCGU- -5'
14091 3' -53.5 NC_003521.1 + 87792 0.66 0.975935
Target:  5'- cUCGUCGgucUCGGGCGGccuggGCCAGGaGCGg -3'
miRNA:   3'- aAGUAGC---AGUUCGUCa----CGGUCUgCGU- -5'
14091 3' -53.5 NC_003521.1 + 95632 0.66 0.984533
Target:  5'- -aCcgUGUCGaggcgcAGCAgGUGCCAGACGgAg -3'
miRNA:   3'- aaGuaGCAGU------UCGU-CACGGUCUGCgU- -5'
14091 3' -53.5 NC_003521.1 + 186648 0.68 0.957158
Target:  5'- gUCGaCGUCGcgcGGCGGUGgCGGAgGCGg -3'
miRNA:   3'- aAGUaGCAGU---UCGUCACgGUCUgCGU- -5'
14091 3' -53.5 NC_003521.1 + 119070 0.68 0.952859
Target:  5'- aUCAUCcaccaGUCGGGCAagcagguGUGgCAGGCGCGc -3'
miRNA:   3'- aAGUAG-----CAGUUCGU-------CACgGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 50740 0.68 0.940167
Target:  5'- gUCGUCGgcgCAgcAGCGG-GCCAGaACGUAc -3'
miRNA:   3'- aAGUAGCa--GU--UCGUCaCGGUC-UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 185739 0.66 0.984533
Target:  5'- gUgAUCGcCGAGCGGgugcGCCGGAgCGCc -3'
miRNA:   3'- aAgUAGCaGUUCGUCa---CGGUCU-GCGu -5'
14091 3' -53.5 NC_003521.1 + 111268 0.74 0.723357
Target:  5'- -cCAUCGUCGGGCccgccGUGCCAG-CGCc -3'
miRNA:   3'- aaGUAGCAGUUCGu----CACGGUCuGCGu -5'
14091 3' -53.5 NC_003521.1 + 142475 0.73 0.752841
Target:  5'- -cCGUCGUCAuGCGcUGUCAGACGCc -3'
miRNA:   3'- aaGUAGCAGUuCGUcACGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 197239 0.71 0.826044
Target:  5'- gUCcUCGUCGccgcccgaggAGCGGUGCUuGACGCGg -3'
miRNA:   3'- aAGuAGCAGU----------UCGUCACGGuCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 52689 0.71 0.858634
Target:  5'- -gCAgCGUC-GGCGGUGCCAGcCGCu -3'
miRNA:   3'- aaGUaGCAGuUCGUCACGGUCuGCGu -5'
14091 3' -53.5 NC_003521.1 + 44155 0.7 0.901194
Target:  5'- -cCGUCGUCGAGCAGcaGCU-GGCGCc -3'
miRNA:   3'- aaGUAGCAGUUCGUCa-CGGuCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 14929 0.69 0.919346
Target:  5'- cUUCGagCG-CGAGCGGcagcGCCAGACGCGc -3'
miRNA:   3'- -AAGUa-GCaGUUCGUCa---CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 207309 0.69 0.924915
Target:  5'- cUCAUCaguGUCuauGAGUGcGUGCCGGACGCu -3'
miRNA:   3'- aAGUAG---CAG---UUCGU-CACGGUCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.