miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 3' -53.5 NC_003521.1 + 214802 0.66 0.982645
Target:  5'- cUUCAccgcCGUCGGGC---GCCGGGCGCGg -3'
miRNA:   3'- -AAGUa---GCAGUUCGucaCGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 219104 0.67 0.973325
Target:  5'- -gCAUCGUCAccagccacaugAGCAGcGCCGuaGCGCAg -3'
miRNA:   3'- aaGUAGCAGU-----------UCGUCaCGGUc-UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 76043 0.66 0.975935
Target:  5'- cUCcUCG--GAGCGGgccGCCAGACGCu -3'
miRNA:   3'- aAGuAGCagUUCGUCa--CGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 225548 0.66 0.978354
Target:  5'- cUCGUCacCAGGCAGUGC-AGACGgGg -3'
miRNA:   3'- aAGUAGcaGUUCGUCACGgUCUGCgU- -5'
14091 3' -53.5 NC_003521.1 + 141705 0.66 0.978354
Target:  5'- aUCA-CGUC-GGUAGuUGCUGGACGCu -3'
miRNA:   3'- aAGUaGCAGuUCGUC-ACGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 196352 0.66 0.980588
Target:  5'- -cCAgcgCGUgCAGGUAGUGCguGGCGUu -3'
miRNA:   3'- aaGUa--GCA-GUUCGUCACGguCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 69994 0.66 0.980588
Target:  5'- gUC-UCGUCGuGCAGUcCCAGcgaGCGCAg -3'
miRNA:   3'- aAGuAGCAGUuCGUCAcGGUC---UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 206776 0.66 0.980588
Target:  5'- aUUAUCGUCGAGUAucGCgacauaaaaCAGACGCGg -3'
miRNA:   3'- aAGUAGCAGUUCGUcaCG---------GUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 22023 0.66 0.982645
Target:  5'- aUCAUacaccCGUCAcccacccagaAGuCAGaGCCGGACGCAg -3'
miRNA:   3'- aAGUA-----GCAGU----------UC-GUCaCGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 218351 0.67 0.973325
Target:  5'- gUUCAUCacCAGGCAGgccaccgugaGCCAGGCGUg -3'
miRNA:   3'- -AAGUAGcaGUUCGUCa---------CGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 117276 0.67 0.970515
Target:  5'- -cCGUCGUCGGccGUGGUGCCGGcuccccucACGCu -3'
miRNA:   3'- aaGUAGCAGUU--CGUCACGGUC--------UGCGu -5'
14091 3' -53.5 NC_003521.1 + 197443 0.67 0.960827
Target:  5'- -cCAUgGcCAGGCGGcGCCAG-CGCAu -3'
miRNA:   3'- aaGUAgCaGUUCGUCaCGGUCuGCGU- -5'
14091 3' -53.5 NC_003521.1 + 192020 0.71 0.869277
Target:  5'- aUCGUCGUCAGGUucugcaccgccggcGUGCgcggCAGACGCGg -3'
miRNA:   3'- aAGUAGCAGUUCGu-------------CACG----GUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 68130 0.7 0.88791
Target:  5'- -aCGcCGUaCGAGCAGUGCugguauCAGGCGCAg -3'
miRNA:   3'- aaGUaGCA-GUUCGUCACG------GUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 100169 0.7 0.894668
Target:  5'- --gGUCGUUggGgUAGggcGCCAGGCGCAg -3'
miRNA:   3'- aagUAGCAGuuC-GUCa--CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 34130 0.7 0.894668
Target:  5'- gUCGUCGaUGAGCAGgGCCAGgcccacGCGCAc -3'
miRNA:   3'- aAGUAGCaGUUCGUCaCGGUC------UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 109370 0.69 0.924915
Target:  5'- cUCGUCcagcggCAGGCAG-GCCAGGuCGCGg -3'
miRNA:   3'- aAGUAGca----GUUCGUCaCGGUCU-GCGU- -5'
14091 3' -53.5 NC_003521.1 + 101494 0.69 0.930241
Target:  5'- ----gUGcUCGAGCAGcggcgGCCAGACGCGg -3'
miRNA:   3'- aaguaGC-AGUUCGUCa----CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 225793 0.68 0.953261
Target:  5'- ---cUCGUCAG--GGUGCCAGGCGUc -3'
miRNA:   3'- aaguAGCAGUUcgUCACGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 195534 0.67 0.96047
Target:  5'- gUUCAUgaUGUUcaugcagAAGCacGGUGCCAGugGCAg -3'
miRNA:   3'- -AAGUA--GCAG-------UUCG--UCACGGUCugCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.