miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 3' -53.5 NC_003521.1 + 14929 0.69 0.919346
Target:  5'- cUUCGagCG-CGAGCGGcagcGCCAGACGCGc -3'
miRNA:   3'- -AAGUa-GCaGUUCGUCa---CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 22023 0.66 0.982645
Target:  5'- aUCAUacaccCGUCAcccacccagaAGuCAGaGCCGGACGCAg -3'
miRNA:   3'- aAGUA-----GCAGU----------UC-GUCaCGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 34130 0.7 0.894668
Target:  5'- gUCGUCGaUGAGCAGgGCCAGgcccacGCGCAc -3'
miRNA:   3'- aAGUAGCaGUUCGUCaCGGUC------UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 44155 0.7 0.901194
Target:  5'- -cCGUCGUCGAGCAGcaGCU-GGCGCc -3'
miRNA:   3'- aaGUAGCAGUUCGUCa-CGGuCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 50740 0.68 0.940167
Target:  5'- gUCGUCGgcgCAgcAGCGG-GCCAGaACGUAc -3'
miRNA:   3'- aAGUAGCa--GU--UCGUCaCGGUC-UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 52689 0.71 0.858634
Target:  5'- -gCAgCGUC-GGCGGUGCCAGcCGCu -3'
miRNA:   3'- aaGUaGCAGuUCGUCACGGUCuGCGu -5'
14091 3' -53.5 NC_003521.1 + 68130 0.7 0.88791
Target:  5'- -aCGcCGUaCGAGCAGUGCugguauCAGGCGCAg -3'
miRNA:   3'- aaGUaGCA-GUUCGUCACG------GUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 69994 0.66 0.980588
Target:  5'- gUC-UCGUCGuGCAGUcCCAGcgaGCGCAg -3'
miRNA:   3'- aAGuAGCAGUuCGUCAcGGUC---UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 76043 0.66 0.975935
Target:  5'- cUCcUCG--GAGCGGgccGCCAGACGCu -3'
miRNA:   3'- aAGuAGCagUUCGUCa--CGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 78219 0.67 0.967187
Target:  5'- cUCGUCGgaggcugUCGAGCgAGUGCCAc-CGCAg -3'
miRNA:   3'- aAGUAGC-------AGUUCG-UCACGGUcuGCGU- -5'
14091 3' -53.5 NC_003521.1 + 84203 0.66 0.984533
Target:  5'- -cCAgggCGUCGcGCAGcaCCAGGCGCGa -3'
miRNA:   3'- aaGUa--GCAGUuCGUCacGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 87792 0.66 0.975935
Target:  5'- cUCGUCGgucUCGGGCGGccuggGCCAGGaGCGg -3'
miRNA:   3'- aAGUAGC---AGUUCGUCa----CGGUCUgCGU- -5'
14091 3' -53.5 NC_003521.1 + 95632 0.66 0.984533
Target:  5'- -aCcgUGUCGaggcgcAGCAgGUGCCAGACGgAg -3'
miRNA:   3'- aaGuaGCAGU------UCGU-CACGGUCUGCgU- -5'
14091 3' -53.5 NC_003521.1 + 100169 0.7 0.894668
Target:  5'- --gGUCGUUggGgUAGggcGCCAGGCGCAg -3'
miRNA:   3'- aagUAGCAGuuC-GUCa--CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 101494 0.69 0.930241
Target:  5'- ----gUGcUCGAGCAGcggcgGCCAGACGCGg -3'
miRNA:   3'- aaguaGC-AGUUCGUCa----CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 108030 0.67 0.973325
Target:  5'- gUCggCGUCAGGCGGcgGCgGgauGACGCGa -3'
miRNA:   3'- aAGuaGCAGUUCGUCa-CGgU---CUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 109370 0.69 0.924915
Target:  5'- cUCGUCcagcggCAGGCAG-GCCAGGuCGCGg -3'
miRNA:   3'- aAGUAGca----GUUCGUCaCGGUCU-GCGU- -5'
14091 3' -53.5 NC_003521.1 + 111268 0.74 0.723357
Target:  5'- -cCAUCGUCGGGCccgccGUGCCAG-CGCc -3'
miRNA:   3'- aaGUAGCAGUUCGu----CACGGUCuGCGu -5'
14091 3' -53.5 NC_003521.1 + 114131 0.67 0.973325
Target:  5'- aUCAUgGUCGAGUAcUGCCuGGCGg- -3'
miRNA:   3'- aAGUAgCAGUUCGUcACGGuCUGCgu -5'
14091 3' -53.5 NC_003521.1 + 117276 0.67 0.970515
Target:  5'- -cCGUCGUCGGccGUGGUGCCGGcuccccucACGCu -3'
miRNA:   3'- aaGUAGCAGUU--CGUCACGGUC--------UGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.