miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14092 3' -49.8 NC_003521.1 + 93423 0.7 0.987822
Target:  5'- cCUCACCGCCAcGcGAUCc--GCCAUCu- -3'
miRNA:   3'- -GAGUGGUGGU-C-CUAGuuaUGGUAGuc -5'
14092 3' -49.8 NC_003521.1 + 94970 0.67 0.998189
Target:  5'- -cCGCCGCCGGGccCAgagacgcguuaauaGUGCCGUCGu -3'
miRNA:   3'- gaGUGGUGGUCCuaGU--------------UAUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 101057 0.66 0.999348
Target:  5'- --gGCCGCCGacggccGGAUCc-UGCCGUCGGc -3'
miRNA:   3'- gagUGGUGGU------CCUAGuuAUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 105591 0.66 0.9992
Target:  5'- gUCGCCGCCGccGGcgCA--GCCGcUCAGg -3'
miRNA:   3'- gAGUGGUGGU--CCuaGUuaUGGU-AGUC- -5'
14092 3' -49.8 NC_003521.1 + 108978 0.67 0.998284
Target:  5'- gUCACCuCCAGGA-CcGUGCCGUUu- -3'
miRNA:   3'- gAGUGGuGGUCCUaGuUAUGGUAGuc -5'
14092 3' -49.8 NC_003521.1 + 109425 0.67 0.998284
Target:  5'- aUCAUgGCCAGGAUagaCAggGCCGUgGGc -3'
miRNA:   3'- gAGUGgUGGUCCUA---GUuaUGGUAgUC- -5'
14092 3' -49.8 NC_003521.1 + 118224 0.69 0.992819
Target:  5'- -cCGCCgucGCCGGGGuggUCAAUGCCucguGUCGGg -3'
miRNA:   3'- gaGUGG---UGGUCCU---AGUUAUGG----UAGUC- -5'
14092 3' -49.8 NC_003521.1 + 121620 0.69 0.990578
Target:  5'- gCUCACCACCuGGcgCAGcGCCAc--- -3'
miRNA:   3'- -GAGUGGUGGuCCuaGUUaUGGUaguc -5'
14092 3' -49.8 NC_003521.1 + 123589 0.68 0.996025
Target:  5'- -gCGgCGCCGGGAgccgcCGcgGCCGUCAGc -3'
miRNA:   3'- gaGUgGUGGUCCUa----GUuaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 126851 0.67 0.99795
Target:  5'- -gCACCGCCAGGAaCA--GCUcgCGGc -3'
miRNA:   3'- gaGUGGUGGUCCUaGUuaUGGuaGUC- -5'
14092 3' -49.8 NC_003521.1 + 134164 1.1 0.015691
Target:  5'- aCUCACCACCAGGAUCAAUACCAUCAGu -3'
miRNA:   3'- -GAGUGGUGGUCCUAGUUAUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 134241 0.66 0.9992
Target:  5'- cCUCACCgACC-GGAUCG--ACUcgCAGa -3'
miRNA:   3'- -GAGUGG-UGGuCCUAGUuaUGGuaGUC- -5'
14092 3' -49.8 NC_003521.1 + 135332 0.67 0.998571
Target:  5'- -aCACCACUGGGAcgucgUCGAcagGCCGUaCAGu -3'
miRNA:   3'- gaGUGGUGGUCCU-----AGUUa--UGGUA-GUC- -5'
14092 3' -49.8 NC_003521.1 + 142427 0.73 0.929279
Target:  5'- gUCACCACCAGcGUCGGcACCAgcgucuUCAGg -3'
miRNA:   3'- gAGUGGUGGUCcUAGUUaUGGU------AGUC- -5'
14092 3' -49.8 NC_003521.1 + 148149 0.66 0.999575
Target:  5'- gUCACCGCCAGGAaC---ACCAgcugCAu -3'
miRNA:   3'- gAGUGGUGGUCCUaGuuaUGGUa---GUc -5'
14092 3' -49.8 NC_003521.1 + 148875 0.7 0.987822
Target:  5'- cCUCGCCGCCacGGGGUCc--GCCGcCGGg -3'
miRNA:   3'- -GAGUGGUGG--UCCUAGuuaUGGUaGUC- -5'
14092 3' -49.8 NC_003521.1 + 162662 0.7 0.982567
Target:  5'- -gCGCCACCAGGAU--GUGCC-UCGu -3'
miRNA:   3'- gaGUGGUGGUCCUAguUAUGGuAGUc -5'
14092 3' -49.8 NC_003521.1 + 163849 0.68 0.996608
Target:  5'- aUCGCCGCCAGcAUCAc-GCgCAUCGGc -3'
miRNA:   3'- gAGUGGUGGUCcUAGUuaUG-GUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 174465 0.66 0.999348
Target:  5'- gCUCGCCGCCggccacgcgagcGGGAUcCAGUugCugcCAGg -3'
miRNA:   3'- -GAGUGGUGG------------UCCUA-GUUAugGua-GUC- -5'
14092 3' -49.8 NC_003521.1 + 180659 0.66 0.999348
Target:  5'- gCUCGCUACCGGGG-CGAcgacauCCAcCAGg -3'
miRNA:   3'- -GAGUGGUGGUCCUaGUUau----GGUaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.