miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14092 3' -49.8 NC_003521.1 + 11213 0.66 0.9992
Target:  5'- aCUCACCugUAuc-UCAAUACCGUCu- -3'
miRNA:   3'- -GAGUGGugGUccuAGUUAUGGUAGuc -5'
14092 3' -49.8 NC_003521.1 + 16929 0.79 0.677101
Target:  5'- aUCAUCACCAGGAaCGAccgccguUACCGUCGGg -3'
miRNA:   3'- gAGUGGUGGUCCUaGUU-------AUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 18668 0.66 0.999575
Target:  5'- gCUgGCCACgGGGGcgcugCAggACCAUCAu -3'
miRNA:   3'- -GAgUGGUGgUCCUa----GUuaUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 26272 0.67 0.998284
Target:  5'- -gCACCACCAGGcaccggucUCGAgGCCAggcCAGg -3'
miRNA:   3'- gaGUGGUGGUCCu-------AGUUaUGGUa--GUC- -5'
14092 3' -49.8 NC_003521.1 + 33871 0.66 0.999472
Target:  5'- -aCGCCA-CGGGcUCAucGCCGUCAGc -3'
miRNA:   3'- gaGUGGUgGUCCuAGUuaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 35340 0.75 0.879058
Target:  5'- uCUCAUCGCgAGGAggAGUGCCGUCGu -3'
miRNA:   3'- -GAGUGGUGgUCCUagUUAUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 41807 0.71 0.975507
Target:  5'- -aCGCCACCGGGAaguggucUCuggAGUGCCAacaUCAGa -3'
miRNA:   3'- gaGUGGUGGUCCU-------AG---UUAUGGU---AGUC- -5'
14092 3' -49.8 NC_003521.1 + 44112 0.69 0.994613
Target:  5'- gUCGCCGCCGGuGAagUCG--GCCGUCGc -3'
miRNA:   3'- gAGUGGUGGUC-CU--AGUuaUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 52189 0.68 0.996608
Target:  5'- --uGCCGCCGGGGcggCGAgcUCAUCAGa -3'
miRNA:   3'- gagUGGUGGUCCUa--GUUauGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 53982 0.66 0.99966
Target:  5'- -cCGCCGCUGGGccgccauucgCAggACCGUCAGa -3'
miRNA:   3'- gaGUGGUGGUCCua--------GUuaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 56672 0.69 0.994613
Target:  5'- gCUCGCgCACCAGGucgCAGUAgCCGccCAGg -3'
miRNA:   3'- -GAGUG-GUGGUCCua-GUUAU-GGUa-GUC- -5'
14092 3' -49.8 NC_003521.1 + 70889 0.75 0.893054
Target:  5'- aUCGCCacACCAGGGccagCAGcGCCGUCAGa -3'
miRNA:   3'- gAGUGG--UGGUCCUa---GUUaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 72130 0.66 0.9992
Target:  5'- uUUGCCcuCCAGGAUUccguuGAUAuCCAUCAGc -3'
miRNA:   3'- gAGUGGu-GGUCCUAG-----UUAU-GGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 72153 0.69 0.993767
Target:  5'- --uGCCACCAGGGaccucCGGcGCCGUCGGc -3'
miRNA:   3'- gagUGGUGGUCCUa----GUUaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 75468 0.7 0.986229
Target:  5'- -gCACUACCAGGAg----ACCAUCGa -3'
miRNA:   3'- gaGUGGUGGUCCUaguuaUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 77268 0.67 0.99795
Target:  5'- aCUCGCCGCCGGGc-----ACCAgCAGg -3'
miRNA:   3'- -GAGUGGUGGUCCuaguuaUGGUaGUC- -5'
14092 3' -49.8 NC_003521.1 + 77633 0.69 0.993767
Target:  5'- -gCGCCgGCCgagAGGAUCGAcguguuggaacUGCCGUCGGg -3'
miRNA:   3'- gaGUGG-UGG---UCCUAGUU-----------AUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 78413 0.66 0.9992
Target:  5'- cCUCGCC-CaCGGGAUCAcagGUACCGa--- -3'
miRNA:   3'- -GAGUGGuG-GUCCUAGU---UAUGGUaguc -5'
14092 3' -49.8 NC_003521.1 + 88663 0.66 0.999348
Target:  5'- --gGCCGCCAGG-UCGGUggGCCggCGGc -3'
miRNA:   3'- gagUGGUGGUCCuAGUUA--UGGuaGUC- -5'
14092 3' -49.8 NC_003521.1 + 89106 0.68 0.996025
Target:  5'- aUCAcCCGCCAGGA-CGAggACCAcgucuUCAGc -3'
miRNA:   3'- gAGU-GGUGGUCCUaGUUa-UGGU-----AGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.