miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14092 3' -49.8 NC_003521.1 + 77268 0.67 0.99795
Target:  5'- aCUCGCCGCCGGGc-----ACCAgCAGg -3'
miRNA:   3'- -GAGUGGUGGUCCuaguuaUGGUaGUC- -5'
14092 3' -49.8 NC_003521.1 + 77633 0.69 0.993767
Target:  5'- -gCGCCgGCCgagAGGAUCGAcguguuggaacUGCCGUCGGg -3'
miRNA:   3'- gaGUGG-UGG---UCCUAGUU-----------AUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 56672 0.69 0.994613
Target:  5'- gCUCGCgCACCAGGucgCAGUAgCCGccCAGg -3'
miRNA:   3'- -GAGUG-GUGGUCCua-GUUAU-GGUa-GUC- -5'
14092 3' -49.8 NC_003521.1 + 193799 0.68 0.996025
Target:  5'- -aCACaauGCCGGGcgUggUACCGUUAGa -3'
miRNA:   3'- gaGUGg--UGGUCCuaGuuAUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 52189 0.68 0.996608
Target:  5'- --uGCCGCCGGGGcggCGAgcUCAUCAGa -3'
miRNA:   3'- gagUGGUGGUCCUa--GUUauGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 220936 0.68 0.997564
Target:  5'- -aCAgCAgCAGGAUCAGcgccgacgcgGCCGUCAGc -3'
miRNA:   3'- gaGUgGUgGUCCUAGUUa---------UGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 126851 0.67 0.99795
Target:  5'- -gCACCGCCAGGAaCA--GCUcgCGGc -3'
miRNA:   3'- gaGUGGUGGUCCUaGUuaUGGuaGUC- -5'
14092 3' -49.8 NC_003521.1 + 184407 0.67 0.99795
Target:  5'- gUCACCAaguaCAGGAUCAgcagcacgAUACCcacCAGa -3'
miRNA:   3'- gAGUGGUg---GUCCUAGU--------UAUGGua-GUC- -5'
14092 3' -49.8 NC_003521.1 + 218906 0.67 0.99795
Target:  5'- -cCGcCCGCCAGGGUCucgACUgcGUCAGc -3'
miRNA:   3'- gaGU-GGUGGUCCUAGuuaUGG--UAGUC- -5'
14092 3' -49.8 NC_003521.1 + 214787 0.69 0.992819
Target:  5'- gCUCGCCGCCGuccucuUCAccGCCGUCGGg -3'
miRNA:   3'- -GAGUGGUGGUccu---AGUuaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 118224 0.69 0.992819
Target:  5'- -cCGCCgucGCCGGGGuggUCAAUGCCucguGUCGGg -3'
miRNA:   3'- gaGUGG---UGGUCCU---AGUUAUGG----UAGUC- -5'
14092 3' -49.8 NC_003521.1 + 187667 0.69 0.991759
Target:  5'- cCUCGCCGCCGuccccgacguGGuUCAAgACCAUCGc -3'
miRNA:   3'- -GAGUGGUGGU----------CCuAGUUaUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 35340 0.75 0.879058
Target:  5'- uCUCAUCGCgAGGAggAGUGCCGUCGu -3'
miRNA:   3'- -GAGUGGUGgUCCUagUUAUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 70889 0.75 0.893054
Target:  5'- aUCGCCacACCAGGGccagCAGcGCCGUCAGa -3'
miRNA:   3'- gAGUGG--UGGUCCUa---GUUaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 190013 0.74 0.923855
Target:  5'- -cCACCACCGGGGaCAccgcUGCCAUCAc -3'
miRNA:   3'- gaGUGGUGGUCCUaGUu---AUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 142427 0.73 0.929279
Target:  5'- gUCACCACCAGcGUCGGcACCAgcgucuUCAGg -3'
miRNA:   3'- gAGUGGUGGUCcUAGUUaUGGU------AGUC- -5'
14092 3' -49.8 NC_003521.1 + 227236 0.73 0.934456
Target:  5'- aCUCGUCGCCAGGGgggcCAAUcggACCGUCGGa -3'
miRNA:   3'- -GAGUGGUGGUCCUa---GUUA---UGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 41807 0.71 0.975507
Target:  5'- -aCGCCACCGGGAaguggucUCuggAGUGCCAacaUCAGa -3'
miRNA:   3'- gaGUGGUGGUCCU-------AG---UUAUGGU---AGUC- -5'
14092 3' -49.8 NC_003521.1 + 93423 0.7 0.987822
Target:  5'- cCUCACCGCCAcGcGAUCc--GCCAUCu- -3'
miRNA:   3'- -GAGUGGUGGU-C-CUAGuuaUGGUAGuc -5'
14092 3' -49.8 NC_003521.1 + 121620 0.69 0.990578
Target:  5'- gCUCACCACCuGGcgCAGcGCCAc--- -3'
miRNA:   3'- -GAGUGGUGGuCCuaGUUaUGGUaguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.