Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14092 | 3' | -49.8 | NC_003521.1 | + | 134164 | 1.1 | 0.015691 |
Target: 5'- aCUCACCACCAGGAUCAAUACCAUCAGu -3' miRNA: 3'- -GAGUGGUGGUCCUAGUUAUGGUAGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 16929 | 0.79 | 0.677101 |
Target: 5'- aUCAUCACCAGGAaCGAccgccguUACCGUCGGg -3' miRNA: 3'- gAGUGGUGGUCCUaGUU-------AUGGUAGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 35340 | 0.75 | 0.879058 |
Target: 5'- uCUCAUCGCgAGGAggAGUGCCGUCGu -3' miRNA: 3'- -GAGUGGUGgUCCUagUUAUGGUAGUc -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 70889 | 0.75 | 0.893054 |
Target: 5'- aUCGCCacACCAGGGccagCAGcGCCGUCAGa -3' miRNA: 3'- gAGUGG--UGGUCCUa---GUUaUGGUAGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 190013 | 0.74 | 0.923855 |
Target: 5'- -cCACCACCGGGGaCAccgcUGCCAUCAc -3' miRNA: 3'- gaGUGGUGGUCCUaGUu---AUGGUAGUc -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 142427 | 0.73 | 0.929279 |
Target: 5'- gUCACCACCAGcGUCGGcACCAgcgucuUCAGg -3' miRNA: 3'- gAGUGGUGGUCcUAGUUaUGGU------AGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 227236 | 0.73 | 0.934456 |
Target: 5'- aCUCGUCGCCAGGGgggcCAAUcggACCGUCGGa -3' miRNA: 3'- -GAGUGGUGGUCCUa---GUUA---UGGUAGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 202117 | 0.71 | 0.97026 |
Target: 5'- -gCGCCACCAGGAcgcccgCgAGUAUCAUCAa -3' miRNA: 3'- gaGUGGUGGUCCUa-----G-UUAUGGUAGUc -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 41807 | 0.71 | 0.975507 |
Target: 5'- -aCGCCACCGGGAaguggucUCuggAGUGCCAacaUCAGa -3' miRNA: 3'- gaGUGGUGGUCCU-------AG---UUAUGGU---AGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 223758 | 0.71 | 0.980483 |
Target: 5'- gUCGCCGCCAG---CGGUAUCGUCGGc -3' miRNA: 3'- gAGUGGUGGUCcuaGUUAUGGUAGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 162662 | 0.7 | 0.982567 |
Target: 5'- -gCGCCACCAGGAU--GUGCC-UCGu -3' miRNA: 3'- gaGUGGUGGUCCUAguUAUGGuAGUc -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 75468 | 0.7 | 0.986229 |
Target: 5'- -gCACUACCAGGAg----ACCAUCGa -3' miRNA: 3'- gaGUGGUGGUCCUaguuaUGGUAGUc -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 93423 | 0.7 | 0.987822 |
Target: 5'- cCUCACCGCCAcGcGAUCc--GCCAUCu- -3' miRNA: 3'- -GAGUGGUGGU-C-CUAGuuaUGGUAGuc -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 148875 | 0.7 | 0.987822 |
Target: 5'- cCUCGCCGCCacGGGGUCc--GCCGcCGGg -3' miRNA: 3'- -GAGUGGUGG--UCCUAGuuaUGGUaGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 210559 | 0.7 | 0.987822 |
Target: 5'- -gCGcCCGCCAGGGUCAGcugGCCA-CGGc -3' miRNA: 3'- gaGU-GGUGGUCCUAGUUa--UGGUaGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 121620 | 0.69 | 0.990578 |
Target: 5'- gCUCACCACCuGGcgCAGcGCCAc--- -3' miRNA: 3'- -GAGUGGUGGuCCuaGUUaUGGUaguc -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 187667 | 0.69 | 0.991759 |
Target: 5'- cCUCGCCGCCGuccccgacguGGuUCAAgACCAUCGc -3' miRNA: 3'- -GAGUGGUGGU----------CCuAGUUaUGGUAGUc -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 214787 | 0.69 | 0.992819 |
Target: 5'- gCUCGCCGCCGuccucuUCAccGCCGUCGGg -3' miRNA: 3'- -GAGUGGUGGUccu---AGUuaUGGUAGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 118224 | 0.69 | 0.992819 |
Target: 5'- -cCGCCgucGCCGGGGuggUCAAUGCCucguGUCGGg -3' miRNA: 3'- gaGUGG---UGGUCCU---AGUUAUGG----UAGUC- -5' |
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14092 | 3' | -49.8 | NC_003521.1 | + | 77633 | 0.69 | 0.993767 |
Target: 5'- -gCGCCgGCCgagAGGAUCGAcguguuggaacUGCCGUCGGg -3' miRNA: 3'- gaGUGG-UGG---UCCUAGUU-----------AUGGUAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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