miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14092 5' -54.8 NC_003521.1 + 235167 0.69 0.90718
Target:  5'- gCGCgaUUGGCGUCGcgucaugguggaaUCCCACGcccugugGUGCg -3'
miRNA:   3'- -GCGgaAACCGUAGC-------------AGGGUGC-------UACGa -5'
14092 5' -54.8 NC_003521.1 + 233366 0.71 0.821374
Target:  5'- gGCUUUUcGCA-CGUCCCGCGugGUGCUg -3'
miRNA:   3'- gCGGAAAcCGUaGCAGGGUGC--UACGA- -5'
14092 5' -54.8 NC_003521.1 + 225091 0.68 0.940123
Target:  5'- gCGCCgaUGGCAcaUCGUa-CACGGUGUg -3'
miRNA:   3'- -GCGGaaACCGU--AGCAggGUGCUACGa -5'
14092 5' -54.8 NC_003521.1 + 224696 0.68 0.944611
Target:  5'- gCGCCcg-GGCGUguggaaguucaCGUCCCGCccguGGUGCUc -3'
miRNA:   3'- -GCGGaaaCCGUA-----------GCAGGGUG----CUACGA- -5'
14092 5' -54.8 NC_003521.1 + 223620 0.68 0.925285
Target:  5'- gGCCUccgucUGGUAggCGU-CCACGAUGCg -3'
miRNA:   3'- gCGGAa----ACCGUa-GCAgGGUGCUACGa -5'
14092 5' -54.8 NC_003521.1 + 194752 0.7 0.868534
Target:  5'- aCGCCg--GGCGUCGcgaccucaUCCCGCccGGUGCc -3'
miRNA:   3'- -GCGGaaaCCGUAGC--------AGGGUG--CUACGa -5'
14092 5' -54.8 NC_003521.1 + 178601 0.7 0.86115
Target:  5'- aGCCgaagaccUUGGCGUCGUCCgUGCGGauuUGCa -3'
miRNA:   3'- gCGGa------AACCGUAGCAGG-GUGCU---ACGa -5'
14092 5' -54.8 NC_003521.1 + 163128 0.67 0.956731
Target:  5'- cCGCCUccucgGGCAucugucugcccUCGUCCCugaGCGGUGgUg -3'
miRNA:   3'- -GCGGAaa---CCGU-----------AGCAGGG---UGCUACgA- -5'
14092 5' -54.8 NC_003521.1 + 159994 0.66 0.969882
Target:  5'- uCGCC---GGCAacUCGUCCUACGA-GUa -3'
miRNA:   3'- -GCGGaaaCCGU--AGCAGGGUGCUaCGa -5'
14092 5' -54.8 NC_003521.1 + 151471 0.66 0.966903
Target:  5'- uGUCUggGGCAUgugCGUgCUugGGUGCg -3'
miRNA:   3'- gCGGAaaCCGUA---GCAgGGugCUACGa -5'
14092 5' -54.8 NC_003521.1 + 149963 0.67 0.963722
Target:  5'- gCGCUUcgcgUUGGCAcUGUgCCGCGcAUGCUc -3'
miRNA:   3'- -GCGGA----AACCGUaGCAgGGUGC-UACGA- -5'
14092 5' -54.8 NC_003521.1 + 149253 0.71 0.829689
Target:  5'- aCGCCUacgacgUGGCcauGUCGUUCCGCGucgGCg -3'
miRNA:   3'- -GCGGAa-----ACCG---UAGCAGGGUGCua-CGa -5'
14092 5' -54.8 NC_003521.1 + 138485 0.67 0.963722
Target:  5'- cCGCCaccccGGCGUCGgcgCCCacgcgcacgacgACGAUGCc -3'
miRNA:   3'- -GCGGaaa--CCGUAGCa--GGG------------UGCUACGa -5'
14092 5' -54.8 NC_003521.1 + 134208 1.07 0.00771
Target:  5'- uCGCCUUUGGCAUCGUCCCACGAUGCUc -3'
miRNA:   3'- -GCGGAAACCGUAGCAGGGUGCUACGA- -5'
14092 5' -54.8 NC_003521.1 + 124054 0.66 0.977664
Target:  5'- uGCCgc-GGCggCGgCCCACGcUGCa -3'
miRNA:   3'- gCGGaaaCCGuaGCaGGGUGCuACGa -5'
14092 5' -54.8 NC_003521.1 + 123296 0.66 0.975256
Target:  5'- cCGCCa--GGuCGUCGUagCCCACGGagUGCa -3'
miRNA:   3'- -GCGGaaaCC-GUAGCA--GGGUGCU--ACGa -5'
14092 5' -54.8 NC_003521.1 + 122652 0.67 0.963722
Target:  5'- uGCCggcgGGCGUCGUCUgcgGCGGUGg- -3'
miRNA:   3'- gCGGaaa-CCGUAGCAGGg--UGCUACga -5'
14092 5' -54.8 NC_003521.1 + 112691 0.66 0.972665
Target:  5'- uCGCCgagcgcgGGCcgcccUCGgacCCCAUGAUGCa -3'
miRNA:   3'- -GCGGaaa----CCGu----AGCa--GGGUGCUACGa -5'
14092 5' -54.8 NC_003521.1 + 104884 0.66 0.975256
Target:  5'- gCGCCcgaGGCGUCGcacaUCCCGCGGccgugGCc -3'
miRNA:   3'- -GCGGaaaCCGUAGC----AGGGUGCUa----CGa -5'
14092 5' -54.8 NC_003521.1 + 87096 0.66 0.975256
Target:  5'- gGCCacggugGGCAUCGUgCCGCuGGUGg- -3'
miRNA:   3'- gCGGaaa---CCGUAGCAgGGUG-CUACga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.