miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 95543 0.66 0.89374
Target:  5'- aGACgCCggcGCGCGAGcuggCCGCCgaGGCCg -3'
miRNA:   3'- aCUG-GGa--CGUGUUCag--GGUGGa-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 209391 0.66 0.89374
Target:  5'- cUGGCgCUGCGCAucaUCCGCCUGcugcacGCCa -3'
miRNA:   3'- -ACUGgGACGUGUucaGGGUGGAC------CGG- -5'
14094 5' -57.9 NC_003521.1 + 207271 0.66 0.89374
Target:  5'- cGugCCUGCGuCAGGcCggCCGCCUuuacuucaucGGCCu -3'
miRNA:   3'- aCugGGACGU-GUUCaG--GGUGGA----------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 118123 0.66 0.89374
Target:  5'- cGGCgCUGCACAA--CCgACC-GGCCc -3'
miRNA:   3'- aCUGgGACGUGUUcaGGgUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 203368 0.66 0.89374
Target:  5'- gUGGCCCgcGCGCGAG-CCCACagcGUCa -3'
miRNA:   3'- -ACUGGGa-CGUGUUCaGGGUGgacCGG- -5'
14094 5' -57.9 NC_003521.1 + 108326 0.67 0.887255
Target:  5'- gGAUuggUCUGCACGGGUCUCug--GGCCg -3'
miRNA:   3'- aCUG---GGACGUGUUCAGGGuggaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 25896 0.67 0.887255
Target:  5'- cUGcCCgCUGUACAuGUUCCGCCaggUGGCa -3'
miRNA:   3'- -ACuGG-GACGUGUuCAGGGUGG---ACCGg -5'
14094 5' -57.9 NC_003521.1 + 204033 0.67 0.887255
Target:  5'- -uGCCCgaaagGCGCGuccuccacgCCCGCCaGGCCa -3'
miRNA:   3'- acUGGGa----CGUGUuca------GGGUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 113423 0.67 0.887255
Target:  5'- -cGCgCUGCACGAccaCCGCCugUGGCCg -3'
miRNA:   3'- acUGgGACGUGUUcagGGUGG--ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 140315 0.67 0.883263
Target:  5'- -cACCgUGCACcguccgacgcccgcGGUgCCACCUGGCg -3'
miRNA:   3'- acUGGgACGUGu-------------UCAgGGUGGACCGg -5'
14094 5' -57.9 NC_003521.1 + 176762 0.67 0.88124
Target:  5'- aGACCCaGCACcgucAGGUCguugagcaccuccagCACCUGGUCg -3'
miRNA:   3'- aCUGGGaCGUG----UUCAGg--------------GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 124830 0.67 0.880561
Target:  5'- cUGcUCCUGCGCGAGaCCaugaacaACCUGGgCg -3'
miRNA:   3'- -ACuGGGACGUGUUCaGGg------UGGACCgG- -5'
14094 5' -57.9 NC_003521.1 + 13850 0.67 0.880561
Target:  5'- uUGGCUCgGCGCGggGGUCUCugCgGGCg -3'
miRNA:   3'- -ACUGGGaCGUGU--UCAGGGugGaCCGg -5'
14094 5' -57.9 NC_003521.1 + 137668 0.67 0.880561
Target:  5'- -cGCCgUGCGCGacgAGaUCCGCCUGGUg -3'
miRNA:   3'- acUGGgACGUGU---UCaGGGUGGACCGg -5'
14094 5' -57.9 NC_003521.1 + 17135 0.67 0.880561
Target:  5'- cGAUCCUGCcgGCGcGcuucgCCCGacccucCCUGGCCa -3'
miRNA:   3'- aCUGGGACG--UGUuCa----GGGU------GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 44098 0.67 0.873662
Target:  5'- gUGGCCCaGCAgaucguCAAGaUCUgCAuCCUGGCCa -3'
miRNA:   3'- -ACUGGGaCGU------GUUC-AGG-GU-GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 33768 0.67 0.873662
Target:  5'- -uGCCCUGCaACGccUCCgGCCUgcGGCCc -3'
miRNA:   3'- acUGGGACG-UGUucAGGgUGGA--CCGG- -5'
14094 5' -57.9 NC_003521.1 + 117257 0.67 0.873662
Target:  5'- cGGCgCUGCACGA---CUGCCUGGCg -3'
miRNA:   3'- aCUGgGACGUGUUcagGGUGGACCGg -5'
14094 5' -57.9 NC_003521.1 + 137049 0.67 0.873662
Target:  5'- cGGCgaggUGCGCGAGUUCaagCACCUGGUCu -3'
miRNA:   3'- aCUGgg--ACGUGUUCAGG---GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 184864 0.67 0.873662
Target:  5'- cGACCCcagGCACAgcAGcgUCCACagaGGCCu -3'
miRNA:   3'- aCUGGGa--CGUGU--UCa-GGGUGga-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.