miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 132173 0.66 0.910182
Target:  5'- aGAUCaaGCACAcgugcgcgcugaucGGcagCCGCCUGGCCa -3'
miRNA:   3'- aCUGGgaCGUGU--------------UCag-GGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 119940 0.66 0.910182
Target:  5'- cGACCacCUGCACGGG-CgugaugacgcgcggCCGCCUcaaGGCCg -3'
miRNA:   3'- aCUGG--GACGUGUUCaG--------------GGUGGA---CCGG- -5'
14094 5' -57.9 NC_003521.1 + 28498 0.66 0.907846
Target:  5'- cGAgCCUGCagcacgugGCGAGUaucaacgccugcgugCCCAugccggccuucgcCCUGGCCa -3'
miRNA:   3'- aCUgGGACG--------UGUUCA---------------GGGU-------------GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 208412 0.66 0.906665
Target:  5'- aGGCCgUGCGCcacGGGcugcugugucgcacgCCCgaggACCUGGCCa -3'
miRNA:   3'- aCUGGgACGUG---UUCa--------------GGG----UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 206661 0.66 0.906071
Target:  5'- uUGGCCC-GCGaccuCAAGgCCUucgugcgcguggGCCUGGCCc -3'
miRNA:   3'- -ACUGGGaCGU----GUUCaGGG------------UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 74756 0.66 0.906071
Target:  5'- aUGGCCCUGCGgGAGUggaugCUGGCUa -3'
miRNA:   3'- -ACUGGGACGUgUUCAgggugGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 23942 0.66 0.906071
Target:  5'- gUGGCCUggaUGcCugGAuGUCCCGCUccacgGGCCu -3'
miRNA:   3'- -ACUGGG---AC-GugUU-CAGGGUGGa----CCGG- -5'
14094 5' -57.9 NC_003521.1 + 236294 0.66 0.906071
Target:  5'- gGACCCUGCGCGuGaucgccguuuUUCCGCUUacucaucggGGCCc -3'
miRNA:   3'- aCUGGGACGUGUuC----------AGGGUGGA---------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 151013 0.66 0.906071
Target:  5'- cGGCCgacacgGCGCAAGUCucggggaaCCGCgUGGUCg -3'
miRNA:   3'- aCUGGga----CGUGUUCAG--------GGUGgACCGG- -5'
14094 5' -57.9 NC_003521.1 + 63327 0.66 0.906071
Target:  5'- cGugCCUGgagaGCGAcugcgaUCCCACCUccacGGCCg -3'
miRNA:   3'- aCugGGACg---UGUUc-----AGGGUGGA----CCGG- -5'
14094 5' -57.9 NC_003521.1 + 35139 0.66 0.906071
Target:  5'- cGACUgaGCGCGGGUgCgCCACgCgcccgGGCCu -3'
miRNA:   3'- aCUGGgaCGUGUUCA-G-GGUG-Ga----CCGG- -5'
14094 5' -57.9 NC_003521.1 + 184982 0.66 0.906071
Target:  5'- gUGGaCCUGUGCAAGgCCgGCCUG-CCg -3'
miRNA:   3'- -ACUgGGACGUGUUCaGGgUGGACcGG- -5'
14094 5' -57.9 NC_003521.1 + 166447 0.66 0.900013
Target:  5'- aGAUCgaGgGCGAgccGUCgCCGCaCUGGCCg -3'
miRNA:   3'- aCUGGgaCgUGUU---CAG-GGUG-GACCGG- -5'
14094 5' -57.9 NC_003521.1 + 64078 0.66 0.900013
Target:  5'- cUGGgUCUGUGCGAGcCCgGCCUGGa- -3'
miRNA:   3'- -ACUgGGACGUGUUCaGGgUGGACCgg -5'
14094 5' -57.9 NC_003521.1 + 77954 0.66 0.900013
Target:  5'- -aGCCCUGCugG-GUCUUggaGCC-GGCCg -3'
miRNA:   3'- acUGGGACGugUuCAGGG---UGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 92212 0.66 0.900013
Target:  5'- cGcCCCUGCuCGGGUCCCGg--GGUCc -3'
miRNA:   3'- aCuGGGACGuGUUCAGGGUggaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 181197 0.66 0.900013
Target:  5'- -aACgCCUGCGagccgcGGUCgCCGCCggGGCCg -3'
miRNA:   3'- acUG-GGACGUgu----UCAG-GGUGGa-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 53624 0.66 0.900013
Target:  5'- cGGuCCCgUGCAC-GGUCaugauCCACCagUGGCCu -3'
miRNA:   3'- aCU-GGG-ACGUGuUCAG-----GGUGG--ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 169905 0.66 0.898154
Target:  5'- gGACCCUGCugGCGcugacggcucugacGG-CgCugCUGGCCc -3'
miRNA:   3'- aCUGGGACG--UGU--------------UCaGgGugGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 207271 0.66 0.89374
Target:  5'- cGugCCUGCGuCAGGcCggCCGCCUuuacuucaucGGCCu -3'
miRNA:   3'- aCugGGACGU-GUUCaG--GGUGGA----------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.