miRNA display CGI


Results 21 - 40 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 16656 0.73 0.535129
Target:  5'- -uGCUCUGCA-AAGUCCCACCgcuccuccugaccUGGCCc -3'
miRNA:   3'- acUGGGACGUgUUCAGGGUGG-------------ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 214513 0.73 0.573698
Target:  5'- cGGCCCUggaagcgcggacaGCGCGuggCCCugGCCUGGCCu -3'
miRNA:   3'- aCUGGGA-------------CGUGUucaGGG--UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 110731 0.73 0.574671
Target:  5'- aGGCCCggcaGCugGcAGUUCCACUcGGCCa -3'
miRNA:   3'- aCUGGGa---CGugU-UCAGGGUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 58379 0.72 0.613859
Target:  5'- aUGACCCccgUGCACAGGgggaUCUGCCgcGGCCg -3'
miRNA:   3'- -ACUGGG---ACGUGUUCa---GGGUGGa-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 132718 0.72 0.621735
Target:  5'- -aGCCCccaUGCcCAAGUCCCcaagcgcuacauCCUGGCCg -3'
miRNA:   3'- acUGGG---ACGuGUUCAGGGu-----------GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 28700 0.72 0.623705
Target:  5'- -cACCCUGCA-GAGUCCgACCgUGcGCCa -3'
miRNA:   3'- acUGGGACGUgUUCAGGgUGG-AC-CGG- -5'
14094 5' -57.9 NC_003521.1 + 53867 0.72 0.623705
Target:  5'- cGGCCggcgUGUACGAGUgCCugCUGGCa -3'
miRNA:   3'- aCUGGg---ACGUGUUCAgGGugGACCGg -5'
14094 5' -57.9 NC_003521.1 + 16202 0.72 0.623705
Target:  5'- cUGGCCCUucgagguggcgGCGCcc-UgCCGCCUGGCCg -3'
miRNA:   3'- -ACUGGGA-----------CGUGuucAgGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 114276 0.72 0.633556
Target:  5'- cGGCCUUcgcGCACGAGUaCCaCAgCUGGCUg -3'
miRNA:   3'- aCUGGGA---CGUGUUCA-GG-GUgGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 31309 0.72 0.637497
Target:  5'- gGGuuCUGCGCGAGUCCCuugcgcagcaucgcgGCCUcGCCu -3'
miRNA:   3'- aCUggGACGUGUUCAGGG---------------UGGAcCGG- -5'
14094 5' -57.9 NC_003521.1 + 22578 0.71 0.643406
Target:  5'- cGuCCuCUGCACcggccuGUCCUACCUGGgCg -3'
miRNA:   3'- aCuGG-GACGUGuu----CAGGGUGGACCgG- -5'
14094 5' -57.9 NC_003521.1 + 106567 0.71 0.653248
Target:  5'- aGAaCCUGCAcCGGGUCaC-CCUGGCCg -3'
miRNA:   3'- aCUgGGACGU-GUUCAGgGuGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 124963 0.71 0.653248
Target:  5'- cGGCCgUGUuugACGAGgcgugcgccgCCCGCCUGaGCCa -3'
miRNA:   3'- aCUGGgACG---UGUUCa---------GGGUGGAC-CGG- -5'
14094 5' -57.9 NC_003521.1 + 105044 0.71 0.657181
Target:  5'- cGGCCCgcccgUGCGCGAGcagccccaggggcgaUCCCACCgccGCCa -3'
miRNA:   3'- aCUGGG-----ACGUGUUC---------------AGGGUGGac-CGG- -5'
14094 5' -57.9 NC_003521.1 + 28368 0.71 0.668959
Target:  5'- cUGGCCUgguugauggcgugGCACGuGUCgcgaCGCCUGGCCa -3'
miRNA:   3'- -ACUGGGa------------CGUGUuCAGg---GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 143950 0.71 0.672877
Target:  5'- cGcACCggCUGCGCGAGUgcuaCCACCcGGCCu -3'
miRNA:   3'- aC-UGG--GACGUGUUCAg---GGUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 180124 0.71 0.681674
Target:  5'- cGACCC-GCGCcgcccccGGGUCCC-CCgcgcGGCCg -3'
miRNA:   3'- aCUGGGaCGUG-------UUCAGGGuGGa---CCGG- -5'
14094 5' -57.9 NC_003521.1 + 38403 0.71 0.68265
Target:  5'- aGACCC--CAUggGUUgCGCCUGGCUu -3'
miRNA:   3'- aCUGGGacGUGuuCAGgGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 49521 0.71 0.68265
Target:  5'- aGACCCgacucguagGCgaACAcGUCCCACUUGGgCg -3'
miRNA:   3'- aCUGGGa--------CG--UGUuCAGGGUGGACCgG- -5'
14094 5' -57.9 NC_003521.1 + 187206 0.71 0.68265
Target:  5'- aUGACCgUGCACGGGaccgugacucgcUCCC-CUUcGGCCa -3'
miRNA:   3'- -ACUGGgACGUGUUC------------AGGGuGGA-CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.