miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 131092 1.11 0.002119
Target:  5'- gUGACCCUGCACAAGUCCCACCUGGCCu -3'
miRNA:   3'- -ACUGGGACGUGUUCAGGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 55848 0.85 0.116896
Target:  5'- cGGCCUUGCACAGGU-CCACgCUGGCCc -3'
miRNA:   3'- aCUGGGACGUGUUCAgGGUG-GACCGG- -5'
14094 5' -57.9 NC_003521.1 + 164309 0.82 0.182341
Target:  5'- aGGCCCUggugucGCGC-GGUCCCGCuCUGGCCg -3'
miRNA:   3'- aCUGGGA------CGUGuUCAGGGUG-GACCGG- -5'
14094 5' -57.9 NC_003521.1 + 213540 0.8 0.236828
Target:  5'- -uACCuCUGCuGCGAGaCCCGCCUGGCCu -3'
miRNA:   3'- acUGG-GACG-UGUUCaGGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 197148 0.8 0.242406
Target:  5'- gUGGCCCUGCugGaAGUUCCGCgCUgGGCCu -3'
miRNA:   3'- -ACUGGGACGugU-UCAGGGUG-GA-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 141487 0.79 0.253889
Target:  5'- --cUCCggGCGCGAGgugCCCACCUGGCCc -3'
miRNA:   3'- acuGGGa-CGUGUUCa--GGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 155896 0.77 0.339559
Target:  5'- aGGCgCUGCACGAGgauacggCCCugCUGGaCCg -3'
miRNA:   3'- aCUGgGACGUGUUCa------GGGugGACC-GG- -5'
14094 5' -57.9 NC_003521.1 + 200469 0.77 0.354463
Target:  5'- aGGCCCUGCGCAGcgCCgugauCCUGGCCa -3'
miRNA:   3'- aCUGGGACGUGUUcaGGgu---GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 125447 0.77 0.362086
Target:  5'- -cGCCCUGCACAug-CCgGcCCUGGCCa -3'
miRNA:   3'- acUGGGACGUGUucaGGgU-GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 25331 0.76 0.377671
Target:  5'- gUGGCCg-GCACGuuGUCCCugcuCCUGGCCu -3'
miRNA:   3'- -ACUGGgaCGUGUu-CAGGGu---GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 89500 0.76 0.377671
Target:  5'- aGGCCCUcGgACGccaCCCGCCUGGCCg -3'
miRNA:   3'- aCUGGGA-CgUGUucaGGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 206217 0.76 0.401879
Target:  5'- cGACCCcgUGCACGAGUCCaucugcgcgCGCCUGcaGCCc -3'
miRNA:   3'- aCUGGG--ACGUGUUCAGG---------GUGGAC--CGG- -5'
14094 5' -57.9 NC_003521.1 + 119029 0.75 0.418557
Target:  5'- cGGCCgaGCGCAAGUaCCGCCaccugcccgUGGCCg -3'
miRNA:   3'- aCUGGgaCGUGUUCAgGGUGG---------ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 191133 0.75 0.427051
Target:  5'- cGACCCgaccUACGAGUUCCugacuaugaACCUGGCCa -3'
miRNA:   3'- aCUGGGac--GUGUUCAGGG---------UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 101962 0.75 0.444343
Target:  5'- gUGAUCCacGCAgAAGgugcagCCCAUCUGGCCg -3'
miRNA:   3'- -ACUGGGa-CGUgUUCa-----GGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 60702 0.74 0.489209
Target:  5'- gGACCCgggggcgGCGCGGGUCgCACCacGCCg -3'
miRNA:   3'- aCUGGGa------CGUGUUCAGgGUGGacCGG- -5'
14094 5' -57.9 NC_003521.1 + 125126 0.74 0.498439
Target:  5'- gGGCaCgCUGUACGGacaccggcuGUUCCGCCUGGCCg -3'
miRNA:   3'- aCUG-G-GACGUGUU---------CAGGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 16497 0.74 0.498439
Target:  5'- cGACUCaGCGCGAGUCaCCGugacgggggcgUCUGGCCa -3'
miRNA:   3'- aCUGGGaCGUGUUCAG-GGU-----------GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 104378 0.74 0.507745
Target:  5'- cUGACCUUgaugacGCACGAGUCgUACUUGGUCu -3'
miRNA:   3'- -ACUGGGA------CGUGUUCAGgGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 128362 0.74 0.507745
Target:  5'- gUGGCCCcGC-CGGGcgcgCCCACCagGGCCg -3'
miRNA:   3'- -ACUGGGaCGuGUUCa---GGGUGGa-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.