miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 179207 0.69 0.757843
Target:  5'- aGGCgCUGaACGugguucucuuguuGGUCCCGCCgcgGGCCu -3'
miRNA:   3'- aCUGgGACgUGU-------------UCAGGGUGGa--CCGG- -5'
14094 5' -57.9 NC_003521.1 + 49521 0.71 0.68265
Target:  5'- aGACCCgacucguagGCgaACAcGUCCCACUUGGgCg -3'
miRNA:   3'- aCUGGGa--------CG--UGUuCAGGGUGGACCgG- -5'
14094 5' -57.9 NC_003521.1 + 187206 0.71 0.68265
Target:  5'- aUGACCgUGCACGGGaccgugacucgcUCCC-CUUcGGCCa -3'
miRNA:   3'- -ACUGGgACGUGUUC------------AGGGuGGA-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 233438 0.7 0.692384
Target:  5'- cGGCCUcGaCGC-GGUCCCuuCUGGCCa -3'
miRNA:   3'- aCUGGGaC-GUGuUCAGGGugGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 32227 0.7 0.702071
Target:  5'- cGGCCCagacgGC-CAGGUCCCACUcgagcgucaGGCCc -3'
miRNA:   3'- aCUGGGa----CGuGUUCAGGGUGGa--------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 202575 0.7 0.721274
Target:  5'- cUGACCCUGgGCcgcGUcucgccccgCCCGCCgaGGCCg -3'
miRNA:   3'- -ACUGGGACgUGuu-CA---------GGGUGGa-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 234982 0.7 0.727931
Target:  5'- aGGCCUacGUGCGgucccagcgguagcGGUCCC-CCUGGCCu -3'
miRNA:   3'- aCUGGGa-CGUGU--------------UCAGGGuGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 204053 0.7 0.740193
Target:  5'- gUGGCCCUGC-CAgucgccgcAGUCgCACCacacgucgugGGCCa -3'
miRNA:   3'- -ACUGGGACGuGU--------UCAGgGUGGa---------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 77947 0.69 0.749525
Target:  5'- cGGCCCaccUGCGCGcGcCCCugCgcguUGGCCa -3'
miRNA:   3'- aCUGGG---ACGUGUuCaGGGugG----ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 38403 0.71 0.68265
Target:  5'- aGACCC--CAUggGUUgCGCCUGGCUu -3'
miRNA:   3'- aCUGGGacGUGuuCAGgGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 143950 0.71 0.672877
Target:  5'- cGcACCggCUGCGCGAGUgcuaCCACCcGGCCu -3'
miRNA:   3'- aC-UGG--GACGUGUUCAg---GGUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 105044 0.71 0.657181
Target:  5'- cGGCCCgcccgUGCGCGAGcagccccaggggcgaUCCCACCgccGCCa -3'
miRNA:   3'- aCUGGG-----ACGUGUUC---------------AGGGUGGac-CGG- -5'
14094 5' -57.9 NC_003521.1 + 197148 0.8 0.242406
Target:  5'- gUGGCCCUGCugGaAGUUCCGCgCUgGGCCu -3'
miRNA:   3'- -ACUGGGACGugU-UCAGGGUG-GA-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 141487 0.79 0.253889
Target:  5'- --cUCCggGCGCGAGgugCCCACCUGGCCc -3'
miRNA:   3'- acuGGGa-CGUGUUCa--GGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 60702 0.74 0.489209
Target:  5'- gGACCCgggggcgGCGCGGGUCgCACCacGCCg -3'
miRNA:   3'- aCUGGGa------CGUGUUCAGgGUGGacCGG- -5'
14094 5' -57.9 NC_003521.1 + 16497 0.74 0.498439
Target:  5'- cGACUCaGCGCGAGUCaCCGugacgggggcgUCUGGCCa -3'
miRNA:   3'- aCUGGGaCGUGUUCAG-GGU-----------GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 16656 0.73 0.535129
Target:  5'- -uGCUCUGCA-AAGUCCCACCgcuccuccugaccUGGCCc -3'
miRNA:   3'- acUGGGACGUgUUCAGGGUGG-------------ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 58379 0.72 0.613859
Target:  5'- aUGACCCccgUGCACAGGgggaUCUGCCgcGGCCg -3'
miRNA:   3'- -ACUGGG---ACGUGUUCa---GGGUGGa-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 28700 0.72 0.623705
Target:  5'- -cACCCUGCA-GAGUCCgACCgUGcGCCa -3'
miRNA:   3'- acUGGGACGUgUUCAGGgUGG-AC-CGG- -5'
14094 5' -57.9 NC_003521.1 + 31309 0.72 0.637497
Target:  5'- gGGuuCUGCGCGAGUCCCuugcgcagcaucgcgGCCUcGCCu -3'
miRNA:   3'- aCUggGACGUGUUCAGGG---------------UGGAcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.