Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14094 | 5' | -57.9 | NC_003521.1 | + | 141936 | 0.66 | 0.911911 |
Target: 5'- cUGACCgUGCAgCGcguGGgcgCCCACCUgcugGGCg -3' miRNA: 3'- -ACUGGgACGU-GU---UCa--GGGUGGA----CCGg -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 63327 | 0.66 | 0.906071 |
Target: 5'- cGugCCUGgagaGCGAcugcgaUCCCACCUccacGGCCg -3' miRNA: 3'- aCugGGACg---UGUUc-----AGGGUGGA----CCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 33085 | 0.66 | 0.912483 |
Target: 5'- aUGGCCuuCUGCACGGGcUCCagccaGCCgaugacggcguagcgGGCCu -3' miRNA: 3'- -ACUGG--GACGUGUUC-AGGg----UGGa--------------CCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 197335 | 0.66 | 0.911911 |
Target: 5'- aGGCCCUGgGCGAGgucaucggcUCCUuCgUGGCg -3' miRNA: 3'- aCUGGGACgUGUUC---------AGGGuGgACCGg -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 68269 | 0.66 | 0.911911 |
Target: 5'- cGACCCcgggacagcgGCACGAGauccCCCGCCUgacGGUg -3' miRNA: 3'- aCUGGGa---------CGUGUUCa---GGGUGGA---CCGg -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 68331 | 0.66 | 0.911911 |
Target: 5'- --cCCCUGgACGAGgauuccuaUCCCGCCgacGGCg -3' miRNA: 3'- acuGGGACgUGUUC--------AGGGUGGa--CCGg -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 88548 | 0.66 | 0.911911 |
Target: 5'- cGGCCUccucgGgGCAGGgcaCCAgCUGGCCc -3' miRNA: 3'- aCUGGGa----CgUGUUCag-GGUgGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 166447 | 0.66 | 0.900013 |
Target: 5'- aGAUCgaGgGCGAgccGUCgCCGCaCUGGCCg -3' miRNA: 3'- aCUGGgaCgUGUU---CAG-GGUG-GACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 194803 | 0.66 | 0.911911 |
Target: 5'- gUGGCCCUuCACGG--UgCugCUGGCCg -3' miRNA: 3'- -ACUGGGAcGUGUUcaGgGugGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 35139 | 0.66 | 0.906071 |
Target: 5'- cGACUgaGCGCGGGUgCgCCACgCgcccgGGCCu -3' miRNA: 3'- aCUGGgaCGUGUUCA-G-GGUG-Ga----CCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 92212 | 0.66 | 0.900013 |
Target: 5'- cGcCCCUGCuCGGGUCCCGg--GGUCc -3' miRNA: 3'- aCuGGGACGuGUUCAGGGUggaCCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 132173 | 0.66 | 0.910182 |
Target: 5'- aGAUCaaGCACAcgugcgcgcugaucGGcagCCGCCUGGCCa -3' miRNA: 3'- aCUGGgaCGUGU--------------UCag-GGUGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 122486 | 0.66 | 0.917533 |
Target: 5'- aUGuCCUUGgGCGGGUUCUGCagGGCCa -3' miRNA: 3'- -ACuGGGACgUGUUCAGGGUGgaCCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 201420 | 0.66 | 0.917533 |
Target: 5'- cGGCCUgUGCcaACAGGaCCagcugUACCUGGCCc -3' miRNA: 3'- aCUGGG-ACG--UGUUCaGG-----GUGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 64078 | 0.66 | 0.900013 |
Target: 5'- cUGGgUCUGUGCGAGcCCgGCCUGGa- -3' miRNA: 3'- -ACUgGGACGUGUUCaGGgUGGACCgg -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 77136 | 0.66 | 0.911911 |
Target: 5'- cGGCCUUGCgcuGCGAGaCCCACUUGuugaGCa -3' miRNA: 3'- aCUGGGACG---UGUUCaGGGUGGAC----CGg -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 72009 | 0.66 | 0.89374 |
Target: 5'- gGGCCCaGCuuCAGGaugCgCCGCgUGGCCu -3' miRNA: 3'- aCUGGGaCGu-GUUCa--G-GGUGgACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 80994 | 0.66 | 0.917533 |
Target: 5'- cGGCCCuucuccuuggUGUGCAuGUCCCGCagcaccuugacgCUGGUCu -3' miRNA: 3'- aCUGGG----------ACGUGUuCAGGGUG------------GACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 223836 | 0.66 | 0.917533 |
Target: 5'- gGGCgCCUGCu---GUCCCugC-GGCUg -3' miRNA: 3'- aCUG-GGACGuguuCAGGGugGaCCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 114676 | 0.66 | 0.917533 |
Target: 5'- cGACaa-GCGCGAcg-CCGCCUGGCCc -3' miRNA: 3'- aCUGggaCGUGUUcagGGUGGACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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