miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 174 0.69 0.794591
Target:  5'- cGACCCgccgGCccgaaACAcGUCCgACC-GGCCg -3'
miRNA:   3'- aCUGGGa---CG-----UGUuCAGGgUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 1192 0.66 0.917533
Target:  5'- cGGCCUgUGCcaACAGGaCCagcugUACCUGGCCc -3'
miRNA:   3'- aCUGGG-ACG--UGUUCaGG-----GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 2347 0.7 0.730772
Target:  5'- cUGACCCUGgGCcgcGUcuccgccccgCCCGCCgaGGCCg -3'
miRNA:   3'- -ACUGGGACgUGuu-CA----------GGGUGGa-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 5815 0.68 0.820065
Target:  5'- aGACCUagggguggUGC-CGGGUCCCggcgACCggGGCCc -3'
miRNA:   3'- aCUGGG--------ACGuGUUCAGGG----UGGa-CCGG- -5'
14094 5' -57.9 NC_003521.1 + 6691 0.69 0.756002
Target:  5'- aGGgCCUGCGCccgcgagcgcugcuGGGUCUCGCCguggugcagGGCCu -3'
miRNA:   3'- aCUgGGACGUG--------------UUCAGGGUGGa--------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 13850 0.67 0.880561
Target:  5'- uUGGCUCgGCGCGggGGUCUCugCgGGCg -3'
miRNA:   3'- -ACUGGGaCGUGU--UCAGGGugGaCCGg -5'
14094 5' -57.9 NC_003521.1 + 13902 0.68 0.81088
Target:  5'- gGGCCCgGCGCGgagggggccgcggAGg-CCGCgCUGGCCg -3'
miRNA:   3'- aCUGGGaCGUGU-------------UCagGGUG-GACCGG- -5'
14094 5' -57.9 NC_003521.1 + 15120 0.67 0.859269
Target:  5'- cGAUCC-GCACGAGggcgCCUgggagcGCCUGGaCCc -3'
miRNA:   3'- aCUGGGaCGUGUUCa---GGG------UGGACC-GG- -5'
14094 5' -57.9 NC_003521.1 + 15233 0.68 0.820065
Target:  5'- cGGCCgaGCGCGAGg-CCGCCgagcGCCa -3'
miRNA:   3'- aCUGGgaCGUGUUCagGGUGGac--CGG- -5'
14094 5' -57.9 NC_003521.1 + 16202 0.72 0.623705
Target:  5'- cUGGCCCUucgagguggcgGCGCcc-UgCCGCCUGGCCg -3'
miRNA:   3'- -ACUGGGA-----------CGUGuucAgGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 16497 0.74 0.498439
Target:  5'- cGACUCaGCGCGAGUCaCCGugacgggggcgUCUGGCCa -3'
miRNA:   3'- aCUGGGaCGUGUUCAG-GGU-----------GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 16656 0.73 0.535129
Target:  5'- -uGCUCUGCA-AAGUCCCACCgcuccuccugaccUGGCCc -3'
miRNA:   3'- acUGGGACGUgUUCAGGGUGG-------------ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 17135 0.67 0.880561
Target:  5'- cGAUCCUGCcgGCGcGcuucgCCCGacccucCCUGGCCa -3'
miRNA:   3'- aCUGGGACG--UGUuCa----GGGU------GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 21589 0.69 0.794591
Target:  5'- cGGCgCUGCugAccugGGUCCUgcaacucugcuGCCUGGCg -3'
miRNA:   3'- aCUGgGACGugU----UCAGGG-----------UGGACCGg -5'
14094 5' -57.9 NC_003521.1 + 22302 0.68 0.811722
Target:  5'- --cUCCUGCACcuucacGGUCugCCugCUGGCCu -3'
miRNA:   3'- acuGGGACGUGu-----UCAG--GGugGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 22578 0.71 0.643406
Target:  5'- cGuCCuCUGCACcggccuGUCCUACCUGGgCg -3'
miRNA:   3'- aCuGG-GACGUGuu----CAGGGUGGACCgG- -5'
14094 5' -57.9 NC_003521.1 + 23942 0.66 0.906071
Target:  5'- gUGGCCUggaUGcCugGAuGUCCCGCUccacgGGCCu -3'
miRNA:   3'- -ACUGGG---AC-GugUU-CAGGGUGGa----CCGG- -5'
14094 5' -57.9 NC_003521.1 + 24628 0.66 0.911911
Target:  5'- gGACCCcGCGCcGGUgCUCAgcgccuucguCCUGGCg -3'
miRNA:   3'- aCUGGGaCGUGuUCA-GGGU----------GGACCGg -5'
14094 5' -57.9 NC_003521.1 + 24810 0.66 0.911911
Target:  5'- gGGCCCUGCGCuugcuGGUgggcuucuacaCCACCaugGGCa -3'
miRNA:   3'- aCUGGGACGUGu----UCAg----------GGUGGa--CCGg -5'
14094 5' -57.9 NC_003521.1 + 25331 0.76 0.377671
Target:  5'- gUGGCCg-GCACGuuGUCCCugcuCCUGGCCu -3'
miRNA:   3'- -ACUGGgaCGUGUu-CAGGGu---GGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.