miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 240723 0.69 0.794591
Target:  5'- cGACCCgccgGCccgaaACAcGUCCgACC-GGCCg -3'
miRNA:   3'- aCUGGGa---CG-----UGUuCAGGgUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 239842 0.68 0.828249
Target:  5'- cGGCCCaGCGgGAGcagaCCGCC-GGCCu -3'
miRNA:   3'- aCUGGGaCGUgUUCag--GGUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 236294 0.66 0.906071
Target:  5'- gGACCCUGCGCGuGaucgccguuuUUCCGCUUacucaucggGGCCc -3'
miRNA:   3'- aCUGGGACGUGUuC----------AGGGUGGA---------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 234982 0.7 0.727931
Target:  5'- aGGCCUacGUGCGgucccagcgguagcGGUCCC-CCUGGCCu -3'
miRNA:   3'- aCUGGGa-CGUGU--------------UCAGGGuGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 233438 0.7 0.692384
Target:  5'- cGGCCUcGaCGC-GGUCCCuuCUGGCCa -3'
miRNA:   3'- aCUGGGaC-GUGuUCAGGGugGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 227638 0.68 0.844116
Target:  5'- cGGCCCgagcgGCACGccuGGUcaggaCCCGCCUGuaCg -3'
miRNA:   3'- aCUGGGa----CGUGU---UCA-----GGGUGGACcgG- -5'
14094 5' -57.9 NC_003521.1 + 223836 0.66 0.917533
Target:  5'- gGGCgCCUGCu---GUCCCugC-GGCUg -3'
miRNA:   3'- aCUG-GGACGuguuCAGGGugGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 223446 0.67 0.871554
Target:  5'- uUGAUCCUaagucgcgccaguaGCaACGAGUCUCGgCCguUGGCCa -3'
miRNA:   3'- -ACUGGGA--------------CG-UGUUCAGGGU-GG--ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 214888 0.68 0.817578
Target:  5'- aGACCCUgGCcgccuGCAAGcacaucuuggauuuUgCCACCUGGCg -3'
miRNA:   3'- aCUGGGA-CG-----UGUUC--------------AgGGUGGACCGg -5'
14094 5' -57.9 NC_003521.1 + 214713 0.68 0.844116
Target:  5'- cGGCCC-GC-CGAacUCUACCUGGCCg -3'
miRNA:   3'- aCUGGGaCGuGUUcaGGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 214513 0.73 0.573698
Target:  5'- cGGCCCUggaagcgcggacaGCGCGuggCCCugGCCUGGCCu -3'
miRNA:   3'- aCUGGGA-------------CGUGUucaGGG--UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 213540 0.8 0.236828
Target:  5'- -uACCuCUGCuGCGAGaCCCGCCUGGCCu -3'
miRNA:   3'- acUGG-GACG-UGUUCaGGGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 213412 0.7 0.705931
Target:  5'- aGGCCUacgUGCGCAucaacaacaaccacgAGaUCCCcgugGCCUGGCCc -3'
miRNA:   3'- aCUGGG---ACGUGU---------------UC-AGGG----UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 209391 0.66 0.89374
Target:  5'- cUGGCgCUGCGCAucaUCCGCCUGcugcacGCCa -3'
miRNA:   3'- -ACUGgGACGUGUucaGGGUGGAC------CGG- -5'
14094 5' -57.9 NC_003521.1 + 209187 0.71 0.68265
Target:  5'- cGACaCCUGgGCGcuUUCCACCUaccGGCCa -3'
miRNA:   3'- aCUG-GGACgUGUucAGGGUGGA---CCGG- -5'
14094 5' -57.9 NC_003521.1 + 208412 0.66 0.906665
Target:  5'- aGGCCgUGCGCcacGGGcugcugugucgcacgCCCgaggACCUGGCCa -3'
miRNA:   3'- aCUGGgACGUG---UUCa--------------GGG----UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 207271 0.66 0.89374
Target:  5'- cGugCCUGCGuCAGGcCggCCGCCUuuacuucaucGGCCu -3'
miRNA:   3'- aCugGGACGU-GUUCaG--GGUGGA----------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 206661 0.66 0.906071
Target:  5'- uUGGCCC-GCGaccuCAAGgCCUucgugcgcguggGCCUGGCCc -3'
miRNA:   3'- -ACUGGGaCGU----GUUCaGGG------------UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 206418 0.7 0.740193
Target:  5'- -cGCCCaGCugA--UCCuCACCUGGCCc -3'
miRNA:   3'- acUGGGaCGugUucAGG-GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 206217 0.76 0.401879
Target:  5'- cGACCCcgUGCACGAGUCCaucugcgcgCGCCUGcaGCCc -3'
miRNA:   3'- aCUGGG--ACGUGUUCAGG---------GUGGAC--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.