miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 5' -57.9 NC_003521.1 + 25896 0.67 0.887255
Target:  5'- cUGcCCgCUGUACAuGUUCCGCCaggUGGCa -3'
miRNA:   3'- -ACuGG-GACGUGUuCAGGGUGG---ACCGg -5'
14094 5' -57.9 NC_003521.1 + 28319 0.68 0.828249
Target:  5'- cGACCCcgGCGCGGccugcggaCCGCCggUGGCCg -3'
miRNA:   3'- aCUGGGa-CGUGUUcag-----GGUGG--ACCGG- -5'
14094 5' -57.9 NC_003521.1 + 28368 0.71 0.668959
Target:  5'- cUGGCCUgguugauggcgugGCACGuGUCgcgaCGCCUGGCCa -3'
miRNA:   3'- -ACUGGGa------------CGUGUuCAGg---GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 28498 0.66 0.907846
Target:  5'- cGAgCCUGCagcacgugGCGAGUaucaacgccugcgugCCCAugccggccuucgcCCUGGCCa -3'
miRNA:   3'- aCUgGGACG--------UGUUCA---------------GGGU-------------GGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 28700 0.72 0.623705
Target:  5'- -cACCCUGCA-GAGUCCgACCgUGcGCCa -3'
miRNA:   3'- acUGGGACGUgUUCAGGgUGG-AC-CGG- -5'
14094 5' -57.9 NC_003521.1 + 29428 0.67 0.859269
Target:  5'- cGGCUgCUGCACGAGagCCggcGCCUgacGGCCu -3'
miRNA:   3'- aCUGG-GACGUGUUCagGG---UGGA---CCGG- -5'
14094 5' -57.9 NC_003521.1 + 31309 0.72 0.637497
Target:  5'- gGGuuCUGCGCGAGUCCCuugcgcagcaucgcgGCCUcGCCu -3'
miRNA:   3'- aCUggGACGUGUUCAGGG---------------UGGAcCGG- -5'
14094 5' -57.9 NC_003521.1 + 32227 0.7 0.702071
Target:  5'- cGGCCCagacgGC-CAGGUCCCACUcgagcgucaGGCCc -3'
miRNA:   3'- aCUGGGa----CGuGUUCAGGGUGGa--------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 33085 0.66 0.912483
Target:  5'- aUGGCCuuCUGCACGGGcUCCagccaGCCgaugacggcguagcgGGCCu -3'
miRNA:   3'- -ACUGG--GACGUGUUC-AGGg----UGGa--------------CCGG- -5'
14094 5' -57.9 NC_003521.1 + 33421 0.69 0.785818
Target:  5'- aGGCCCaGCACGuagaccuuGUCCuCGCCcGGCa -3'
miRNA:   3'- aCUGGGaCGUGUu-------CAGG-GUGGaCCGg -5'
14094 5' -57.9 NC_003521.1 + 33768 0.67 0.873662
Target:  5'- -uGCCCUGCaACGccUCCgGCCUgcGGCCc -3'
miRNA:   3'- acUGGGACG-UGUucAGGgUGGA--CCGG- -5'
14094 5' -57.9 NC_003521.1 + 35139 0.66 0.906071
Target:  5'- cGACUgaGCGCGGGUgCgCCACgCgcccgGGCCu -3'
miRNA:   3'- aCUGGgaCGUGUUCA-G-GGUG-Ga----CCGG- -5'
14094 5' -57.9 NC_003521.1 + 36149 0.69 0.776917
Target:  5'- cGACCCUGCccgaggaggaggACAccccggacGGcgugCCCacgcACCUGGCCg -3'
miRNA:   3'- aCUGGGACG------------UGU--------UCa---GGG----UGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 36680 0.7 0.711703
Target:  5'- cGGCCgaGCugAGGccgggcUCCggCGCCUGGCCc -3'
miRNA:   3'- aCUGGgaCGugUUC------AGG--GUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 38403 0.71 0.68265
Target:  5'- aGACCC--CAUggGUUgCGCCUGGCUu -3'
miRNA:   3'- aCUGGGacGUGuuCAGgGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 39615 0.68 0.828249
Target:  5'- cGGCCCaGCGgGAGcagaCCGCC-GGCCu -3'
miRNA:   3'- aCUGGGaCGUgUUCag--GGUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 40496 0.69 0.794591
Target:  5'- cGACCCgccgGCccgaaACAcGUCCgACC-GGCCg -3'
miRNA:   3'- aCUGGGa---CG-----UGUuCAGGgUGGaCCGG- -5'
14094 5' -57.9 NC_003521.1 + 42848 0.68 0.836269
Target:  5'- cGACCgCgacuacCGCAAGUUCCACCagGGCa -3'
miRNA:   3'- aCUGG-Gac----GUGUUCAGGGUGGa-CCGg -5'
14094 5' -57.9 NC_003521.1 + 43376 0.69 0.785818
Target:  5'- aGAgCaUGCGCuGG-CgCCGCCUGGCCa -3'
miRNA:   3'- aCUgGgACGUGuUCaG-GGUGGACCGG- -5'
14094 5' -57.9 NC_003521.1 + 44098 0.67 0.873662
Target:  5'- gUGGCCCaGCAgaucguCAAGaUCUgCAuCCUGGCCa -3'
miRNA:   3'- -ACUGGGaCGU------GUUC-AGG-GU-GGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.