Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14094 | 5' | -57.9 | NC_003521.1 | + | 131092 | 1.11 | 0.002119 |
Target: 5'- gUGACCCUGCACAAGUCCCACCUGGCCu -3' miRNA: 3'- -ACUGGGACGUGUUCAGGGUGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 132718 | 0.72 | 0.621735 |
Target: 5'- -aGCCCccaUGCcCAAGUCCCcaagcgcuacauCCUGGCCg -3' miRNA: 3'- acUGGG---ACGuGUUCAGGGu-----------GGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 53867 | 0.72 | 0.623705 |
Target: 5'- cGGCCggcgUGUACGAGUgCCugCUGGCa -3' miRNA: 3'- aCUGGg---ACGUGUUCAgGGugGACCGg -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 122486 | 0.66 | 0.917533 |
Target: 5'- aUGuCCUUGgGCGGGUUCUGCagGGCCa -3' miRNA: 3'- -ACuGGGACgUGUUCAGGGUGgaCCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 200469 | 0.77 | 0.354463 |
Target: 5'- aGGCCCUGCGCAGcgCCgugauCCUGGCCa -3' miRNA: 3'- aCUGGGACGUGUUcaGGgu---GGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 125447 | 0.77 | 0.362086 |
Target: 5'- -cGCCCUGCACAug-CCgGcCCUGGCCa -3' miRNA: 3'- acUGGGACGUGUucaGGgU-GGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 89500 | 0.76 | 0.377671 |
Target: 5'- aGGCCCUcGgACGccaCCCGCCUGGCCg -3' miRNA: 3'- aCUGGGA-CgUGUucaGGGUGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 206217 | 0.76 | 0.401879 |
Target: 5'- cGACCCcgUGCACGAGUCCaucugcgcgCGCCUGcaGCCc -3' miRNA: 3'- aCUGGG--ACGUGUUCAGG---------GUGGAC--CGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 101962 | 0.75 | 0.444343 |
Target: 5'- gUGAUCCacGCAgAAGgugcagCCCAUCUGGCCg -3' miRNA: 3'- -ACUGGGa-CGUgUUCa-----GGGUGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 110731 | 0.73 | 0.574671 |
Target: 5'- aGGCCCggcaGCugGcAGUUCCACUcGGCCa -3' miRNA: 3'- aCUGGGa---CGugU-UCAGGGUGGaCCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 104378 | 0.74 | 0.507745 |
Target: 5'- cUGACCUUgaugacGCACGAGUCgUACUUGGUCu -3' miRNA: 3'- -ACUGGGA------CGUGUUCAGgGUGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 191133 | 0.75 | 0.427051 |
Target: 5'- cGACCCgaccUACGAGUUCCugacuaugaACCUGGCCa -3' miRNA: 3'- aCUGGGac--GUGUUCAGGG---------UGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 164309 | 0.82 | 0.182341 |
Target: 5'- aGGCCCUggugucGCGC-GGUCCCGCuCUGGCCg -3' miRNA: 3'- aCUGGGA------CGUGuUCAGGGUG-GACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 128362 | 0.74 | 0.507745 |
Target: 5'- gUGGCCCcGC-CGGGcgcgCCCACCagGGCCg -3' miRNA: 3'- -ACUGGGaCGuGUUCa---GGGUGGa-CCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 213540 | 0.8 | 0.236828 |
Target: 5'- -uACCuCUGCuGCGAGaCCCGCCUGGCCu -3' miRNA: 3'- acUGG-GACG-UGUUCaGGGUGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 119029 | 0.75 | 0.418557 |
Target: 5'- cGGCCgaGCGCAAGUaCCGCCaccugcccgUGGCCg -3' miRNA: 3'- aCUGGgaCGUGUUCAgGGUGG---------ACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 214513 | 0.73 | 0.573698 |
Target: 5'- cGGCCCUggaagcgcggacaGCGCGuggCCCugGCCUGGCCu -3' miRNA: 3'- aCUGGGA-------------CGUGUucaGGG--UGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 16202 | 0.72 | 0.623705 |
Target: 5'- cUGGCCCUucgagguggcgGCGCcc-UgCCGCCUGGCCg -3' miRNA: 3'- -ACUGGGA-----------CGUGuucAgGGUGGACCGG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 155896 | 0.77 | 0.339559 |
Target: 5'- aGGCgCUGCACGAGgauacggCCCugCUGGaCCg -3' miRNA: 3'- aCUGgGACGUGUUCa------GGGugGACC-GG- -5' |
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14094 | 5' | -57.9 | NC_003521.1 | + | 25331 | 0.76 | 0.377671 |
Target: 5'- gUGGCCg-GCACGuuGUCCCugcuCCUGGCCu -3' miRNA: 3'- -ACUGGgaCGUGUu-CAGGGu---GGACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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