miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 200066 0.66 0.791411
Target:  5'- cGGCUgGCUUaccgCCGGCuuGGCCUcGCCAg -3'
miRNA:   3'- -CCGGgCGGAa---GGUCGu-CUGGA-CGGUg -5'
14096 3' -60.7 NC_003521.1 + 17105 0.66 0.791411
Target:  5'- cGGaCCCGCCgucguacCCGGCGaggucgucGAuCCUGCCGg -3'
miRNA:   3'- -CC-GGGCGGaa-----GGUCGU--------CU-GGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 25548 0.66 0.788815
Target:  5'- uGGCCUGCCUcugcaucucgcccuUCCAGCuguuggcGGCCUcGCUc- -3'
miRNA:   3'- -CCGGGCGGA--------------AGGUCGu------CUGGA-CGGug -5'
14096 3' -60.7 NC_003521.1 + 22284 0.66 0.782713
Target:  5'- cGGCCuCGCCUggCAGCucuCCUGCaccuuCACg -3'
miRNA:   3'- -CCGG-GCGGAagGUCGucuGGACG-----GUG- -5'
14096 3' -60.7 NC_003521.1 + 27390 0.66 0.782713
Target:  5'- aGGCCCGUCg-CUGGgAGACCaucUGCuCGCg -3'
miRNA:   3'- -CCGGGCGGaaGGUCgUCUGG---ACG-GUG- -5'
14096 3' -60.7 NC_003521.1 + 184552 0.66 0.782713
Target:  5'- uGGCCUGCgagUCCAaccucugccuGCcGGCCUGCCuCa -3'
miRNA:   3'- -CCGGGCGga-AGGU----------CGuCUGGACGGuG- -5'
14096 3' -60.7 NC_003521.1 + 32810 0.66 0.782713
Target:  5'- aGGCCagauaCGCCgggagcgUCCGGCGGAauuCCUuguuuuacGCCGCu -3'
miRNA:   3'- -CCGG-----GCGGa------AGGUCGUCU---GGA--------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 185604 0.66 0.782713
Target:  5'- gGGCUguauuaaaCGCCgacggagCCGGCGGA-CUGCCAUc -3'
miRNA:   3'- -CCGG--------GCGGaa-----GGUCGUCUgGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 87705 0.66 0.782713
Target:  5'- aGGCCCGUgUUgUAgauGCAGACCcgguugaggUGCCAg -3'
miRNA:   3'- -CCGGGCGgAAgGU---CGUCUGG---------ACGGUg -5'
14096 3' -60.7 NC_003521.1 + 122640 0.66 0.782713
Target:  5'- cGGcCCCGaCUUUgCCGGCGGGCgucguCUGCgGCg -3'
miRNA:   3'- -CC-GGGC-GGAA-GGUCGUCUG-----GACGgUG- -5'
14096 3' -60.7 NC_003521.1 + 212409 0.66 0.773894
Target:  5'- cGGUaCCGCCaggCuCAGCAGGCCcaugaugGCCAg -3'
miRNA:   3'- -CCG-GGCGGaa-G-GUCGUCUGGa------CGGUg -5'
14096 3' -60.7 NC_003521.1 + 221620 0.66 0.773894
Target:  5'- uGCCCGCaaUCguGCAuGGCCUuagcucGCCGCc -3'
miRNA:   3'- cCGGGCGgaAGguCGU-CUGGA------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 224298 0.66 0.773894
Target:  5'- gGGUCCGUUgcgcUCCAGCcGAgCCgagcGCCGCa -3'
miRNA:   3'- -CCGGGCGGa---AGGUCGuCU-GGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 143712 0.66 0.773894
Target:  5'- cGCCgCGCCUUCUgcacGCuGGCCgacGCCAUc -3'
miRNA:   3'- cCGG-GCGGAAGGu---CGuCUGGa--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 72034 0.66 0.773894
Target:  5'- uGGCCUGCaccaggUCCugguGCAGACCcuUGCuCAUc -3'
miRNA:   3'- -CCGGGCGga----AGGu---CGUCUGG--ACG-GUG- -5'
14096 3' -60.7 NC_003521.1 + 65626 0.66 0.773894
Target:  5'- cGGCCCGCgaggagcugacgCgcgCCAGCcaGGACCUGgagaacgccauCCGCg -3'
miRNA:   3'- -CCGGGCG------------Gaa-GGUCG--UCUGGAC-----------GGUG- -5'
14096 3' -60.7 NC_003521.1 + 220890 0.66 0.773894
Target:  5'- aGGCuuCCGCCUUCUgcugcGGCguccaGGACCaccaGCCGCu -3'
miRNA:   3'- -CCG--GGCGGAAGG-----UCG-----UCUGGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 13203 0.66 0.771226
Target:  5'- cGGgCCGCCguguuggagggccgaCCGGCGcccaaGCCUGCCAUg -3'
miRNA:   3'- -CCgGGCGGaa-------------GGUCGUc----UGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 167683 0.67 0.768547
Target:  5'- cGGCgCCGCCgccgcugcccccgCCGuGCAGcACCUccgugGCCACg -3'
miRNA:   3'- -CCG-GGCGGaa-----------GGU-CGUC-UGGA-----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 71836 0.67 0.764961
Target:  5'- cGCCCGCC-UCCcGC-GACC-GaCCGCg -3'
miRNA:   3'- cCGGGCGGaAGGuCGuCUGGaC-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.