miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 85341 0.66 0.80841
Target:  5'- cGGCCCGCCgcaggCCGGCGucUCUcUCACc -3'
miRNA:   3'- -CCGGGCGGaa---GGUCGUcuGGAcGGUG- -5'
14096 3' -60.7 NC_003521.1 + 153464 0.66 0.807574
Target:  5'- cGGCUCGCaggCCAcguacacGCGGAugccCUUGCCGCg -3'
miRNA:   3'- -CCGGGCGgaaGGU-------CGUCU----GGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 181389 0.66 0.807574
Target:  5'- aGCUCGCUg-CCGGCGGcggcgccgcugucGCgUGCCACg -3'
miRNA:   3'- cCGGGCGGaaGGUCGUC-------------UGgACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 127306 0.66 0.800829
Target:  5'- uGGCgCGCCUcgauguuggcguuggUCAGCGGcuGCCggucgGCCACg -3'
miRNA:   3'- -CCGgGCGGAa--------------GGUCGUC--UGGa----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 98705 0.66 0.799979
Target:  5'- cGUCCGCC-UCCAGCu--CCagGUCGCa -3'
miRNA:   3'- cCGGGCGGaAGGUCGucuGGa-CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 43933 0.66 0.799979
Target:  5'- -aCCCGCCUUCC-GCcccGGCCUcacCCGCg -3'
miRNA:   3'- ccGGGCGGAAGGuCGu--CUGGAc--GGUG- -5'
14096 3' -60.7 NC_003521.1 + 126060 0.66 0.799979
Target:  5'- uGGUCU-CCgugUCCAGCAG-CUgugGCCGCg -3'
miRNA:   3'- -CCGGGcGGa--AGGUCGUCuGGa--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 72148 0.66 0.799979
Target:  5'- cGGCCUGCCa-CCAG-GGACCUccggcGCCGu -3'
miRNA:   3'- -CCGGGCGGaaGGUCgUCUGGA-----CGGUg -5'
14096 3' -60.7 NC_003521.1 + 137154 0.66 0.799979
Target:  5'- cGCCCGCCauggCC-GCGG-CCgcagcgGCCGCc -3'
miRNA:   3'- cCGGGCGGaa--GGuCGUCuGGa-----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 167195 0.66 0.799979
Target:  5'- aGGCCUucuGCUUgggCUGGCAGGCgC-GCCGCa -3'
miRNA:   3'- -CCGGG---CGGAa--GGUCGUCUG-GaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 16398 0.66 0.799979
Target:  5'- cGCUCGCCcaCCAcGCAGcGCCUGgCCGg -3'
miRNA:   3'- cCGGGCGGaaGGU-CGUC-UGGAC-GGUg -5'
14096 3' -60.7 NC_003521.1 + 145864 0.66 0.799979
Target:  5'- gGGCCCGgCggCgGGCGGcGCCgacgacgagGCCGCc -3'
miRNA:   3'- -CCGGGCgGaaGgUCGUC-UGGa--------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 130515 0.66 0.799979
Target:  5'- aGGCCC-CCUaCCAGCGcGACaacuucgUGCUGCg -3'
miRNA:   3'- -CCGGGcGGAaGGUCGU-CUGg------ACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 177591 0.66 0.799979
Target:  5'- cGGCgCCGCCgguUCCGGCcGuucCgCUGCCGg -3'
miRNA:   3'- -CCG-GGCGGa--AGGUCGuCu--G-GACGGUg -5'
14096 3' -60.7 NC_003521.1 + 88661 0.66 0.799979
Target:  5'- aGGgCCGCCaggUCGGUGGGCCgGCgGCc -3'
miRNA:   3'- -CCgGGCGGaa-GGUCGUCUGGaCGgUG- -5'
14096 3' -60.7 NC_003521.1 + 7461 0.66 0.799128
Target:  5'- cGGCgacgcauCCGCggaUCCAGCAGGCUcGCCGg -3'
miRNA:   3'- -CCG-------GGCGga-AGGUCGUCUGGaCGGUg -5'
14096 3' -60.7 NC_003521.1 + 62864 0.66 0.797423
Target:  5'- -cCCCGCCU--CAGCAucccucccgguaccGACCgGCCACu -3'
miRNA:   3'- ccGGGCGGAagGUCGU--------------CUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 46000 0.66 0.791411
Target:  5'- aGGCCCaGUagguagguaaCggCCAGCAGcACCgugaaggGCCACa -3'
miRNA:   3'- -CCGGG-CG----------GaaGGUCGUC-UGGa------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 240388 0.66 0.791411
Target:  5'- cGGCUgGCUUaccgCCGGCuuGGCCUcGCCAg -3'
miRNA:   3'- -CCGGgCGGAa---GGUCGu-CUGGA-CGGUg -5'
14096 3' -60.7 NC_003521.1 + 17105 0.66 0.791411
Target:  5'- cGGaCCCGCCgucguacCCGGCGaggucgucGAuCCUGCCGg -3'
miRNA:   3'- -CC-GGGCGGaa-----GGUCGU--------CU-GGACGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.