miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 229087 0.66 0.816698
Target:  5'- gGGCCCGUCgaugaCGGCcGACUcGCCGa -3'
miRNA:   3'- -CCGGGCGGaag--GUCGuCUGGaCGGUg -5'
14096 3' -60.7 NC_003521.1 + 13203 0.66 0.771226
Target:  5'- cGGgCCGCCguguuggagggccgaCCGGCGcccaaGCCUGCCAUg -3'
miRNA:   3'- -CCgGGCGGaa-------------GGUCGUc----UGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 4629 0.66 0.816698
Target:  5'- -aCCCGCUccgUCGGCuuuCCUGCCACc -3'
miRNA:   3'- ccGGGCGGaa-GGUCGucuGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 73296 0.66 0.80841
Target:  5'- cGGCaggaCGCCg---AGCAGACCUGgCUGCu -3'
miRNA:   3'- -CCGg---GCGGaaggUCGUCUGGAC-GGUG- -5'
14096 3' -60.7 NC_003521.1 + 153464 0.66 0.807574
Target:  5'- cGGCUCGCaggCCAcguacacGCGGAugccCUUGCCGCg -3'
miRNA:   3'- -CCGGGCGgaaGGU-------CGUCU----GGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 62864 0.66 0.797423
Target:  5'- -cCCCGCCU--CAGCAucccucccgguaccGACCgGCCACu -3'
miRNA:   3'- ccGGGCGGAagGUCGU--------------CUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 37819 0.66 0.80841
Target:  5'- -aCCCGUCUU--GGCGGGCgaGCCGCc -3'
miRNA:   3'- ccGGGCGGAAggUCGUCUGgaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 88661 0.66 0.799979
Target:  5'- aGGgCCGCCaggUCGGUGGGCCgGCgGCc -3'
miRNA:   3'- -CCgGGCGGaa-GGUCGUCUGGaCGgUG- -5'
14096 3' -60.7 NC_003521.1 + 137154 0.66 0.799979
Target:  5'- cGCCCGCCauggCC-GCGG-CCgcagcgGCCGCc -3'
miRNA:   3'- cCGGGCGGaa--GGuCGUCuGGa-----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 39581 0.66 0.80841
Target:  5'- aGuCCUGCCggcgUCGGCGGuCCUGCCc- -3'
miRNA:   3'- cC-GGGCGGaa--GGUCGUCuGGACGGug -5'
14096 3' -60.7 NC_003521.1 + 101053 0.66 0.80841
Target:  5'- uGGCggCCGCCga-CGGcCGGAuCCUGCCGu -3'
miRNA:   3'- -CCG--GGCGGaagGUC-GUCU-GGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 32810 0.66 0.782713
Target:  5'- aGGCCagauaCGCCgggagcgUCCGGCGGAauuCCUuguuuuacGCCGCu -3'
miRNA:   3'- -CCGG-----GCGGa------AGGUCGUCU---GGA--------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 220890 0.66 0.773894
Target:  5'- aGGCuuCCGCCUUCUgcugcGGCguccaGGACCaccaGCCGCu -3'
miRNA:   3'- -CCG--GGCGGAAGG-----UCG-----UCUGGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 218879 0.66 0.816698
Target:  5'- cGCUCGCCcacuagcUCCAGCccgAGGCCgcccGCCAg -3'
miRNA:   3'- cCGGGCGGa------AGGUCG---UCUGGa---CGGUg -5'
14096 3' -60.7 NC_003521.1 + 85341 0.66 0.80841
Target:  5'- cGGCCCGCCgcaggCCGGCGucUCUcUCACc -3'
miRNA:   3'- -CCGGGCGGaa---GGUCGUcuGGAcGGUG- -5'
14096 3' -60.7 NC_003521.1 + 138450 0.66 0.815876
Target:  5'- -cCCCGCgCgugcaucgCCGGCGGcgccacaucugccACCUGCCGCc -3'
miRNA:   3'- ccGGGCG-Gaa------GGUCGUC-------------UGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 75776 0.66 0.816698
Target:  5'- aGG-CCGCC-UCCAgguGCAGAC--GCCGCg -3'
miRNA:   3'- -CCgGGCGGaAGGU---CGUCUGgaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 27390 0.66 0.782713
Target:  5'- aGGCCCGUCg-CUGGgAGACCaucUGCuCGCg -3'
miRNA:   3'- -CCGGGCGGaaGGUCgUCUGG---ACG-GUG- -5'
14096 3' -60.7 NC_003521.1 + 86172 0.66 0.791411
Target:  5'- uGCCgGCCUcggCCAGCGGcacguGCUUGCUgACg -3'
miRNA:   3'- cCGGgCGGAa--GGUCGUC-----UGGACGG-UG- -5'
14096 3' -60.7 NC_003521.1 + 240388 0.66 0.791411
Target:  5'- cGGCUgGCUUaccgCCGGCuuGGCCUcGCCAg -3'
miRNA:   3'- -CCGGgCGGAa---GGUCGu-CUGGA-CGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.