miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 221620 0.66 0.773894
Target:  5'- uGCCCGCaaUCguGCAuGGCCUuagcucGCCGCc -3'
miRNA:   3'- cCGGGCGgaAGguCGU-CUGGA------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 153464 0.66 0.807574
Target:  5'- cGGCUCGCaggCCAcguacacGCGGAugccCUUGCCGCg -3'
miRNA:   3'- -CCGGGCGgaaGGU-------CGUCU----GGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 37819 0.66 0.80841
Target:  5'- -aCCCGUCUU--GGCGGGCgaGCCGCc -3'
miRNA:   3'- ccGGGCGGAAggUCGUCUGgaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 87705 0.66 0.782713
Target:  5'- aGGCCCGUgUUgUAgauGCAGACCcgguugaggUGCCAg -3'
miRNA:   3'- -CCGGGCGgAAgGU---CGUCUGG---------ACGGUg -5'
14096 3' -60.7 NC_003521.1 + 127306 0.66 0.800829
Target:  5'- uGGCgCGCCUcgauguuggcguuggUCAGCGGcuGCCggucgGCCACg -3'
miRNA:   3'- -CCGgGCGGAa--------------GGUCGUC--UGGa----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 200066 0.66 0.791411
Target:  5'- cGGCUgGCUUaccgCCGGCuuGGCCUcGCCAg -3'
miRNA:   3'- -CCGGgCGGAa---GGUCGu-CUGGA-CGGUg -5'
14096 3' -60.7 NC_003521.1 + 88661 0.66 0.799979
Target:  5'- aGGgCCGCCaggUCGGUGGGCCgGCgGCc -3'
miRNA:   3'- -CCgGGCGGaa-GGUCGUCUGGaCGgUG- -5'
14096 3' -60.7 NC_003521.1 + 224298 0.66 0.773894
Target:  5'- gGGUCCGUUgcgcUCCAGCcGAgCCgagcGCCGCa -3'
miRNA:   3'- -CCGGGCGGa---AGGUCGuCU-GGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 145864 0.66 0.799979
Target:  5'- gGGCCCGgCggCgGGCGGcGCCgacgacgagGCCGCc -3'
miRNA:   3'- -CCGGGCgGaaGgUCGUC-UGGa--------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 72034 0.66 0.773894
Target:  5'- uGGCCUGCaccaggUCCugguGCAGACCcuUGCuCAUc -3'
miRNA:   3'- -CCGGGCGga----AGGu---CGUCUGG--ACG-GUG- -5'
14096 3' -60.7 NC_003521.1 + 212947 0.66 0.816698
Target:  5'- aGCCCGCC-UCCAuGCGGucgagguccuCCgUGCCGu -3'
miRNA:   3'- cCGGGCGGaAGGU-CGUCu---------GG-ACGGUg -5'
14096 3' -60.7 NC_003521.1 + 65626 0.66 0.773894
Target:  5'- cGGCCCGCgaggagcugacgCgcgCCAGCcaGGACCUGgagaacgccauCCGCg -3'
miRNA:   3'- -CCGGGCG------------Gaa-GGUCG--UCUGGAC-----------GGUG- -5'
14096 3' -60.7 NC_003521.1 + 62864 0.66 0.797423
Target:  5'- -cCCCGCCU--CAGCAucccucccgguaccGACCgGCCACu -3'
miRNA:   3'- ccGGGCGGAagGUCGU--------------CUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 126060 0.66 0.799979
Target:  5'- uGGUCU-CCgugUCCAGCAG-CUgugGCCGCg -3'
miRNA:   3'- -CCGGGcGGa--AGGUCGUCuGGa--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 85341 0.66 0.80841
Target:  5'- cGGCCCGCCgcaggCCGGCGucUCUcUCACc -3'
miRNA:   3'- -CCGGGCGGaa---GGUCGUcuGGAcGGUG- -5'
14096 3' -60.7 NC_003521.1 + 17105 0.66 0.791411
Target:  5'- cGGaCCCGCCgucguacCCGGCGaggucgucGAuCCUGCCGg -3'
miRNA:   3'- -CC-GGGCGGaa-----GGUCGU--------CU-GGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 137154 0.66 0.799979
Target:  5'- cGCCCGCCauggCC-GCGG-CCgcagcgGCCGCc -3'
miRNA:   3'- cCGGGCGGaa--GGuCGUCuGGa-----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 212409 0.66 0.773894
Target:  5'- cGGUaCCGCCaggCuCAGCAGGCCcaugaugGCCAg -3'
miRNA:   3'- -CCG-GGCGGaa-G-GUCGUCUGGa------CGGUg -5'
14096 3' -60.7 NC_003521.1 + 73296 0.66 0.80841
Target:  5'- cGGCaggaCGCCg---AGCAGACCUGgCUGCu -3'
miRNA:   3'- -CCGg---GCGGaaggUCGUCUGGAC-GGUG- -5'
14096 3' -60.7 NC_003521.1 + 143712 0.66 0.773894
Target:  5'- cGCCgCGCCUUCUgcacGCuGGCCgacGCCAUc -3'
miRNA:   3'- cCGG-GCGGAAGGu---CGuCUGGa--CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.