miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 130295 1.1 0.001357
Target:  5'- cGGCCCGCCUUCCAGCAGACCUGCCACc -3'
miRNA:   3'- -CCGGGCGGAAGGUCGUCUGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 141509 0.79 0.1811
Target:  5'- uGGCCCGCCUcgUCC--CGGACCUGCCuGCu -3'
miRNA:   3'- -CCGGGCGGA--AGGucGUCUGGACGG-UG- -5'
14096 3' -60.7 NC_003521.1 + 111276 0.77 0.223841
Target:  5'- gGGCCCGCCgugCCAGC--GCC-GCCGCg -3'
miRNA:   3'- -CCGGGCGGaa-GGUCGucUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 138517 0.77 0.229086
Target:  5'- gGGCCCGCUgggUCCGGCGcaccucGACUucuUGCCGCg -3'
miRNA:   3'- -CCGGGCGGa--AGGUCGU------CUGG---ACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 136733 0.76 0.287387
Target:  5'- cGCgCCGCCUUCC-GCGu-CCUGCCGCg -3'
miRNA:   3'- cCG-GGCGGAAGGuCGUcuGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 72396 0.76 0.287387
Target:  5'- cGCCCGCCg-CC-GCGGcCCUGCCGCc -3'
miRNA:   3'- cCGGGCGGaaGGuCGUCuGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 203166 0.75 0.293819
Target:  5'- uGCCCGUCgugCCGGCAGAa-UGCCACc -3'
miRNA:   3'- cCGGGCGGaa-GGUCGUCUggACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 124988 0.75 0.300362
Target:  5'- cGCCCGCCUgagCCAGC--GCCUGCUg- -3'
miRNA:   3'- cCGGGCGGAa--GGUCGucUGGACGGug -5'
14096 3' -60.7 NC_003521.1 + 52311 0.75 0.32345
Target:  5'- gGGCCCGCCggCCuccucguaucucggcGGCGGACCcagGcCCACg -3'
miRNA:   3'- -CCGGGCGGaaGG---------------UCGUCUGGa--C-GGUG- -5'
14096 3' -60.7 NC_003521.1 + 73623 0.75 0.327659
Target:  5'- cGGCgCGCCUgCCAGCccaagcagaAGGCCUccGCCGCg -3'
miRNA:   3'- -CCGgGCGGAaGGUCG---------UCUGGA--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 216367 0.74 0.349309
Target:  5'- aGGCCCGUggUCCGcGCGGACCUGUUcCg -3'
miRNA:   3'- -CCGGGCGgaAGGU-CGUCUGGACGGuG- -5'
14096 3' -60.7 NC_003521.1 + 187282 0.74 0.356749
Target:  5'- cGGCCCGCguuuCUUUCGGCAGcCCggugggagcgGCCGCg -3'
miRNA:   3'- -CCGGGCG----GAAGGUCGUCuGGa---------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 63102 0.74 0.3643
Target:  5'- uGCCCGCCcUCCAGCAGuACCaGCa-- -3'
miRNA:   3'- cCGGGCGGaAGGUCGUC-UGGaCGgug -5'
14096 3' -60.7 NC_003521.1 + 137705 0.73 0.379729
Target:  5'- cGCCgCGCgCUgcgCCAGCuuucGCCUGCCACg -3'
miRNA:   3'- cCGG-GCG-GAa--GGUCGuc--UGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 109992 0.73 0.379729
Target:  5'- cGGCCUGCCggUCCAGCAGGCgggagaUGUgCACc -3'
miRNA:   3'- -CCGGGCGGa-AGGUCGUCUGg-----ACG-GUG- -5'
14096 3' -60.7 NC_003521.1 + 56925 0.73 0.379729
Target:  5'- aGCaCCGCCU-CCAGCAccucGGCCucgUGCCGCa -3'
miRNA:   3'- cCG-GGCGGAaGGUCGU----CUGG---ACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 153177 0.73 0.386814
Target:  5'- gGGCUgCGCCU-CCAGCcugugcgAGGCCUGCgGCg -3'
miRNA:   3'- -CCGG-GCGGAaGGUCG-------UCUGGACGgUG- -5'
14096 3' -60.7 NC_003521.1 + 140685 0.73 0.39559
Target:  5'- aGCCCcacgGCCUUCCcGCAgGACCgccaGCCGCg -3'
miRNA:   3'- cCGGG----CGGAAGGuCGU-CUGGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 197340 0.73 0.420168
Target:  5'- uGG-CCGCCgcggCCAGCAcGGCC-GCCGCg -3'
miRNA:   3'- -CCgGGCGGaa--GGUCGU-CUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 80525 0.73 0.420168
Target:  5'- uGGCcgugcccaCCGCCUUgCCGGCGGAgCCcagGCCGCu -3'
miRNA:   3'- -CCG--------GGCGGAA-GGUCGUCU-GGa--CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.