Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14096 | 3' | -60.7 | NC_003521.1 | + | 240731 | 0.71 | 0.517482 |
Target: 5'- cGGCCCGaaacacguCCgaCCGGCcGGCCcGCCGCa -3' miRNA: 3'- -CCGGGC--------GGaaGGUCGuCUGGaCGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 53208 | 0.72 | 0.428563 |
Target: 5'- cGGCCCGgCUcgCCcuGGCAGGCCgUGCCcACc -3' miRNA: 3'- -CCGGGCgGAa-GG--UCGUCUGG-ACGG-UG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 154480 | 0.72 | 0.445646 |
Target: 5'- cGGCaCCGCCggcgCCGGCaAGACCU-CCAg -3' miRNA: 3'- -CCG-GGCGGaa--GGUCG-UCUGGAcGGUg -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 130516 | 0.72 | 0.471965 |
Target: 5'- uGGCCCugcgGCUgcCCgAGCAGACCgugUGCCACc -3' miRNA: 3'- -CCGGG----CGGaaGG-UCGUCUGG---ACGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 69530 | 0.71 | 0.489941 |
Target: 5'- aGCaCCGCCUUCCAGCccacgcGGAUacagcgcagGCCACa -3' miRNA: 3'- cCG-GGCGGAAGGUCG------UCUGga-------CGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 239290 | 0.71 | 0.499048 |
Target: 5'- cGGCUCGUaguUUUCCAGCu--CCUGCCAg -3' miRNA: 3'- -CCGGGCG---GAAGGUCGucuGGACGGUg -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 94042 | 0.71 | 0.499048 |
Target: 5'- gGGCCCGCCUUCUgucCAGGCCgguuCCAa -3' miRNA: 3'- -CCGGGCGGAAGGuc-GUCUGGac--GGUg -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 163093 | 0.71 | 0.50823 |
Target: 5'- cGGCCCGuCCUcgggcgCCAGCGccacGACCaccGCCGCc -3' miRNA: 3'- -CCGGGC-GGAa-----GGUCGU----CUGGa--CGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 182 | 0.71 | 0.517482 |
Target: 5'- cGGCCCGaaacacguCCgaCCGGCcGGCCcGCCGCa -3' miRNA: 3'- -CCGGGC--------GGaaGGUCGuCUGGaCGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 80525 | 0.73 | 0.420168 |
Target: 5'- uGGCcgugcccaCCGCCUUgCCGGCGGAgCCcagGCCGCu -3' miRNA: 3'- -CCG--------GGCGGAA-GGUCGUCU-GGa--CGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 137705 | 0.73 | 0.379729 |
Target: 5'- cGCCgCGCgCUgcgCCAGCuuucGCCUGCCACg -3' miRNA: 3'- cCGG-GCG-GAa--GGUCGuc--UGGACGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 109992 | 0.73 | 0.379729 |
Target: 5'- cGGCCUGCCggUCCAGCAGGCgggagaUGUgCACc -3' miRNA: 3'- -CCGGGCGGa-AGGUCGUCUGg-----ACG-GUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 138517 | 0.77 | 0.229086 |
Target: 5'- gGGCCCGCUgggUCCGGCGcaccucGACUucuUGCCGCg -3' miRNA: 3'- -CCGGGCGGa--AGGUCGU------CUGG---ACGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 136733 | 0.76 | 0.287387 |
Target: 5'- cGCgCCGCCUUCC-GCGu-CCUGCCGCg -3' miRNA: 3'- cCG-GGCGGAAGGuCGUcuGGACGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 203166 | 0.75 | 0.293819 |
Target: 5'- uGCCCGUCgugCCGGCAGAa-UGCCACc -3' miRNA: 3'- cCGGGCGGaa-GGUCGUCUggACGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 52311 | 0.75 | 0.32345 |
Target: 5'- gGGCCCGCCggCCuccucguaucucggcGGCGGACCcagGcCCACg -3' miRNA: 3'- -CCGGGCGGaaGG---------------UCGUCUGGa--C-GGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 73623 | 0.75 | 0.327659 |
Target: 5'- cGGCgCGCCUgCCAGCccaagcagaAGGCCUccGCCGCg -3' miRNA: 3'- -CCGgGCGGAaGGUCG---------UCUGGA--CGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 187282 | 0.74 | 0.356749 |
Target: 5'- cGGCCCGCguuuCUUUCGGCAGcCCggugggagcgGCCGCg -3' miRNA: 3'- -CCGGGCG----GAAGGUCGUCuGGa---------CGGUG- -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 63102 | 0.74 | 0.3643 |
Target: 5'- uGCCCGCCcUCCAGCAGuACCaGCa-- -3' miRNA: 3'- cCGGGCGGaAGGUCGUC-UGGaCGgug -5' |
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14096 | 3' | -60.7 | NC_003521.1 | + | 56925 | 0.73 | 0.379729 |
Target: 5'- aGCaCCGCCU-CCAGCAccucGGCCucgUGCCGCa -3' miRNA: 3'- cCG-GGCGGAaGGUCGU----CUGG---ACGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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