miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 182 0.71 0.517482
Target:  5'- cGGCCCGaaacacguCCgaCCGGCcGGCCcGCCGCa -3'
miRNA:   3'- -CCGGGC--------GGaaGGUCGuCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 4629 0.66 0.816698
Target:  5'- -aCCCGCUccgUCGGCuuuCCUGCCACc -3'
miRNA:   3'- ccGGGCGGaa-GGUCGucuGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 5371 0.68 0.709403
Target:  5'- gGGCCCGCgcguuCUUCCAuuuGCAGACggGUUGCu -3'
miRNA:   3'- -CCGGGCG-----GAAGGU---CGUCUGgaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 7461 0.66 0.799128
Target:  5'- cGGCgacgcauCCGCggaUCCAGCAGGCUcGCCGg -3'
miRNA:   3'- -CCG-------GGCGga-AGGUCGUCUGGaCGGUg -5'
14096 3' -60.7 NC_003521.1 + 13203 0.66 0.771226
Target:  5'- cGGgCCGCCguguuggagggccgaCCGGCGcccaaGCCUGCCAUg -3'
miRNA:   3'- -CCgGGCGGaa-------------GGUCGUc----UGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 16398 0.66 0.799979
Target:  5'- cGCUCGCCcaCCAcGCAGcGCCUGgCCGg -3'
miRNA:   3'- cCGGGCGGaaGGU-CGUC-UGGAC-GGUg -5'
14096 3' -60.7 NC_003521.1 + 16803 0.71 0.499048
Target:  5'- cGCCCGCCccgaCCGcCGGGCCcGCCGCu -3'
miRNA:   3'- cCGGGCGGaa--GGUcGUCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 17105 0.66 0.791411
Target:  5'- cGGaCCCGCCgucguacCCGGCGaggucgucGAuCCUGCCGg -3'
miRNA:   3'- -CC-GGGCGGaa-----GGUCGU--------CU-GGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 18702 0.67 0.746783
Target:  5'- uGGCCggCGCgaUCCGGCuguGG-CUGCCGCu -3'
miRNA:   3'- -CCGG--GCGgaAGGUCGu--CUgGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 20404 0.68 0.699891
Target:  5'- uGCUCGUCUUUCAGCuGGCCU-UCACc -3'
miRNA:   3'- cCGGGCGGAAGGUCGuCUGGAcGGUG- -5'
14096 3' -60.7 NC_003521.1 + 20989 0.68 0.679757
Target:  5'- gGGCCCGCaCUggaUCCGGgucucggaGGGCCUggaggcggguaacGCCACg -3'
miRNA:   3'- -CCGGGCG-GA---AGGUCg-------UCUGGA-------------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 21548 0.66 0.80841
Target:  5'- gGGCCCGCUcaugugCCAGCcccugcGGGcCCUGCUc- -3'
miRNA:   3'- -CCGGGCGGaa----GGUCG------UCU-GGACGGug -5'
14096 3' -60.7 NC_003521.1 + 22284 0.66 0.782713
Target:  5'- cGGCCuCGCCUggCAGCucuCCUGCaccuuCACg -3'
miRNA:   3'- -CCGG-GCGGAagGUCGucuGGACG-----GUG- -5'
14096 3' -60.7 NC_003521.1 + 22444 0.67 0.737554
Target:  5'- cGCCCGCgCUUCacgCGGCAcGCCUGgCuCACg -3'
miRNA:   3'- cCGGGCG-GAAG---GUCGUcUGGAC-G-GUG- -5'
14096 3' -60.7 NC_003521.1 + 22478 0.71 0.50823
Target:  5'- uGGCCUGCCUggugaugaacaCCGGCAccACCgugGCCACg -3'
miRNA:   3'- -CCGGGCGGAa----------GGUCGUc-UGGa--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 24685 0.67 0.755921
Target:  5'- cGCCCaggugGCCUUCCucuGCcgcGGCCUccgcGCCGCg -3'
miRNA:   3'- cCGGG-----CGGAAGGu--CGu--CUGGA----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 25314 0.69 0.603174
Target:  5'- gGGCggUCGUCUUCCAGguGGCC-GgCACg -3'
miRNA:   3'- -CCG--GGCGGAAGGUCguCUGGaCgGUG- -5'
14096 3' -60.7 NC_003521.1 + 25356 0.66 0.816698
Target:  5'- uGGCCuuCGCCUUCgUGGCucccucGGCCUGgCGCc -3'
miRNA:   3'- -CCGG--GCGGAAG-GUCGu-----CUGGACgGUG- -5'
14096 3' -60.7 NC_003521.1 + 25548 0.66 0.788815
Target:  5'- uGGCCUGCCUcugcaucucgcccuUCCAGCuguuggcGGCCUcGCUc- -3'
miRNA:   3'- -CCGGGCGGA--------------AGGUCGu------CUGGA-CGGug -5'
14096 3' -60.7 NC_003521.1 + 26330 0.67 0.745864
Target:  5'- gGGCCgGCucuccaggggaggCUUCCAGCGGuCCaGCaCGCu -3'
miRNA:   3'- -CCGGgCG-------------GAAGGUCGUCuGGaCG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.