miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 240731 0.71 0.517482
Target:  5'- cGGCCCGaaacacguCCgaCCGGCcGGCCcGCCGCa -3'
miRNA:   3'- -CCGGGC--------GGaaGGUCGuCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 240474 0.68 0.706555
Target:  5'- aGGCgCCGCC-UCCGGCAGcucacgcuugguugGCCguuUGCaCGCu -3'
miRNA:   3'- -CCG-GGCGGaAGGUCGUC--------------UGG---ACG-GUG- -5'
14096 3' -60.7 NC_003521.1 + 240388 0.66 0.791411
Target:  5'- cGGCUgGCUUaccgCCGGCuuGGCCUcGCCAg -3'
miRNA:   3'- -CCGGgCGGAa---GGUCGu-CUGGA-CGGUg -5'
14096 3' -60.7 NC_003521.1 + 239469 0.67 0.728242
Target:  5'- uGGCCCGCggcgcgUUCAGCcccagccgguuGGACCgauacaGCCGCg -3'
miRNA:   3'- -CCGGGCGga----AGGUCG-----------UCUGGa-----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 239290 0.71 0.499048
Target:  5'- cGGCUCGUaguUUUCCAGCu--CCUGCCAg -3'
miRNA:   3'- -CCGGGCG---GAAGGUCGucuGGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 232847 0.67 0.764961
Target:  5'- -cCCCGCCg-CC-GCGGACCccucccgGCCGCg -3'
miRNA:   3'- ccGGGCGGaaGGuCGUCUGGa------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 229087 0.66 0.816698
Target:  5'- gGGCCCGUCgaugaCGGCcGACUcGCCGa -3'
miRNA:   3'- -CCGGGCGGaag--GUCGuCUGGaCGGUg -5'
14096 3' -60.7 NC_003521.1 + 226029 0.68 0.699891
Target:  5'- cGGCgCCGaaCCagUCCAGCAGcACCagcaccucgGCCACg -3'
miRNA:   3'- -CCG-GGC--GGa-AGGUCGUC-UGGa--------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 224298 0.66 0.773894
Target:  5'- gGGUCCGUUgcgcUCCAGCcGAgCCgagcGCCGCa -3'
miRNA:   3'- -CCGGGCGGa---AGGUCGuCU-GGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 223648 0.67 0.728242
Target:  5'- cGCCUGCCcagcugCCAGCGcugcgccucGGCCUcgcGCCGCu -3'
miRNA:   3'- cCGGGCGGaa----GGUCGU---------CUGGA---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 222165 0.66 0.80841
Target:  5'- cGCCC-CCguggCCAGCAGGuCCgUGCgGCc -3'
miRNA:   3'- cCGGGcGGaa--GGUCGUCU-GG-ACGgUG- -5'
14096 3' -60.7 NC_003521.1 + 221620 0.66 0.773894
Target:  5'- uGCCCGCaaUCguGCAuGGCCUuagcucGCCGCc -3'
miRNA:   3'- cCGGGCGgaAGguCGU-CUGGA------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 220890 0.66 0.773894
Target:  5'- aGGCuuCCGCCUUCUgcugcGGCguccaGGACCaccaGCCGCu -3'
miRNA:   3'- -CCG--GGCGGAAGG-----UCG-----UCUGGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 218879 0.66 0.816698
Target:  5'- cGCUCGCCcacuagcUCCAGCccgAGGCCgcccGCCAg -3'
miRNA:   3'- cCGGGCGGa------AGGUCG---UCUGGa---CGGUg -5'
14096 3' -60.7 NC_003521.1 + 218410 0.67 0.718856
Target:  5'- cGGCCaCGCCgcgCAGCAuGGCCaGCgACa -3'
miRNA:   3'- -CCGG-GCGGaagGUCGU-CUGGaCGgUG- -5'
14096 3' -60.7 NC_003521.1 + 217596 0.68 0.661405
Target:  5'- gGGUCCGCCccggaCCAGCAGGggcgUCUcgGCCGCc -3'
miRNA:   3'- -CCGGGCGGaa---GGUCGUCU----GGA--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 216367 0.74 0.349309
Target:  5'- aGGCCCGUggUCCGcGCGGACCUGUUcCg -3'
miRNA:   3'- -CCGGGCGgaAGGU-CGUCUGGACGGuG- -5'
14096 3' -60.7 NC_003521.1 + 212947 0.66 0.816698
Target:  5'- aGCCCGCC-UCCAuGCGGucgagguccuCCgUGCCGu -3'
miRNA:   3'- cCGGGCGGaAGGU-CGUCu---------GG-ACGGUg -5'
14096 3' -60.7 NC_003521.1 + 212409 0.66 0.773894
Target:  5'- cGGUaCCGCCaggCuCAGCAGGCCcaugaugGCCAg -3'
miRNA:   3'- -CCG-GGCGGaa-G-GUCGUCUGGa------CGGUg -5'
14096 3' -60.7 NC_003521.1 + 210560 0.68 0.696071
Target:  5'- cGCCCGCCagggucagcuggCCAcggcaaccgcGCGGACCUGCaGCg -3'
miRNA:   3'- cCGGGCGGaa----------GGU----------CGUCUGGACGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.