miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 27390 0.66 0.782713
Target:  5'- aGGCCCGUCg-CUGGgAGACCaucUGCuCGCg -3'
miRNA:   3'- -CCGGGCGGaaGGUCgUCUGG---ACG-GUG- -5'
14096 3' -60.7 NC_003521.1 + 27797 0.69 0.622576
Target:  5'- cGGCCCGCUcggCCGGCucGCCcggcGCCAUg -3'
miRNA:   3'- -CCGGGCGGaa-GGUCGucUGGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 30924 0.69 0.642005
Target:  5'- cGCCaGCCacUUCCAGUAGACgaGCCcCg -3'
miRNA:   3'- cCGGgCGG--AAGGUCGUCUGgaCGGuG- -5'
14096 3' -60.7 NC_003521.1 + 31340 0.69 0.603174
Target:  5'- cGGCCuCGCCUUUaaaCAGCcuGAUgaGCCGCu -3'
miRNA:   3'- -CCGG-GCGGAAG---GUCGu-CUGgaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 32810 0.66 0.782713
Target:  5'- aGGCCagauaCGCCgggagcgUCCGGCGGAauuCCUuguuuuacGCCGCu -3'
miRNA:   3'- -CCGG-----GCGGa------AGGUCGUCU---GGA--------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 32883 0.7 0.56465
Target:  5'- cGCCCGCg--CCGcCGGugCUGCCGCc -3'
miRNA:   3'- cCGGGCGgaaGGUcGUCugGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 35055 0.67 0.764961
Target:  5'- cGGUUgGUaCUUCCAGCGGGCCaUGCgGg -3'
miRNA:   3'- -CCGGgCG-GAAGGUCGUCUGG-ACGgUg -5'
14096 3' -60.7 NC_003521.1 + 35711 0.69 0.603174
Target:  5'- aGGCCgcgauaaaaggCGCUgaagUCCuGCAGAUCaGCCACa -3'
miRNA:   3'- -CCGG-----------GCGGa---AGGuCGUCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 36797 0.7 0.593499
Target:  5'- aGGaCgCGCCUUUCgGGCAGGCCgugaucacgcGCCACg -3'
miRNA:   3'- -CC-GgGCGGAAGG-UCGUCUGGa---------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 37819 0.66 0.80841
Target:  5'- -aCCCGUCUU--GGCGGGCgaGCCGCc -3'
miRNA:   3'- ccGGGCGGAAggUCGUCUGgaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 39062 0.71 0.499048
Target:  5'- cGGCUCGUaguUUUCCAGCu--CCUGCCAg -3'
miRNA:   3'- -CCGGGCG---GAAGGUCGucuGGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 39241 0.67 0.728242
Target:  5'- uGGCCCGCggcgcgUUCAGCcccagccgguuGGACCgauacaGCCGCg -3'
miRNA:   3'- -CCGGGCGga----AGGUCG-----------UCUGGa-----CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 39581 0.66 0.80841
Target:  5'- aGuCCUGCCggcgUCGGCGGuCCUGCCc- -3'
miRNA:   3'- cC-GGGCGGaa--GGUCGUCuGGACGGug -5'
14096 3' -60.7 NC_003521.1 + 40246 0.67 0.744023
Target:  5'- aGGCgCCGCC-UCCGGCAGcucacgcuugguugGCCguuUGCaCGCc -3'
miRNA:   3'- -CCG-GGCGGaAGGUCGUC--------------UGG---ACG-GUG- -5'
14096 3' -60.7 NC_003521.1 + 40504 0.71 0.517482
Target:  5'- cGGCCCGaaacacguCCgaCCGGCcGGCCcGCCGCa -3'
miRNA:   3'- -CCGGGC--------GGaaGGUCGuCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 43485 0.67 0.731976
Target:  5'- cGGCCgUGCUggCCgcGGCGGccaacauccgucagcGCCUGCCGCc -3'
miRNA:   3'- -CCGG-GCGGaaGG--UCGUC---------------UGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 43670 0.7 0.574231
Target:  5'- aGGCCCaGCgcggaaCUUCCAGCAGg---GCCACg -3'
miRNA:   3'- -CCGGG-CG------GAAGGUCGUCuggaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 43805 0.69 0.629376
Target:  5'- gGGgCCGCCaugUCgCAGCAGccgggucagccgccGCCgGCCGCg -3'
miRNA:   3'- -CCgGGCGGa--AG-GUCGUC--------------UGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 43933 0.66 0.799979
Target:  5'- -aCCCGCCUUCC-GCcccGGCCUcacCCGCg -3'
miRNA:   3'- ccGGGCGGAAGGuCGu--CUGGAc--GGUG- -5'
14096 3' -60.7 NC_003521.1 + 44774 0.68 0.670111
Target:  5'- cGCCgGCCUUCCGcccGguGcucuacaACCUGCUGCa -3'
miRNA:   3'- cCGGgCGGAAGGU---CguC-------UGGACGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.