miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 130295 1.1 0.001357
Target:  5'- cGGCCCGCCUUCCAGCAGACCUGCCACc -3'
miRNA:   3'- -CCGGGCGGAAGGUCGUCUGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 22478 0.71 0.50823
Target:  5'- uGGCCUGCCUggugaugaacaCCGGCAccACCgugGCCACg -3'
miRNA:   3'- -CCGGGCGGAa----------GGUCGUc-UGGa--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 40504 0.71 0.517482
Target:  5'- cGGCCCGaaacacguCCgaCCGGCcGGCCcGCCGCa -3'
miRNA:   3'- -CCGGGC--------GGaaGGUCGuCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 212947 0.66 0.816698
Target:  5'- aGCCCGCC-UCCAuGCGGucgagguccuCCgUGCCGu -3'
miRNA:   3'- cCGGGCGGaAGGU-CGUCu---------GG-ACGGUg -5'
14096 3' -60.7 NC_003521.1 + 216367 0.74 0.349309
Target:  5'- aGGCCCGUggUCCGcGCGGACCUGUUcCg -3'
miRNA:   3'- -CCGGGCGgaAGGU-CGUCUGGACGGuG- -5'
14096 3' -60.7 NC_003521.1 + 153177 0.73 0.386814
Target:  5'- gGGCUgCGCCU-CCAGCcugugcgAGGCCUGCgGCg -3'
miRNA:   3'- -CCGG-GCGGAaGGUCG-------UCUGGACGgUG- -5'
14096 3' -60.7 NC_003521.1 + 197340 0.73 0.420168
Target:  5'- uGG-CCGCCgcggCCAGCAcGGCC-GCCGCg -3'
miRNA:   3'- -CCgGGCGGaa--GGUCGU-CUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 187616 0.72 0.428563
Target:  5'- cGGCCUGCCgggCgAGcCGGGCCgcgcGCCGCu -3'
miRNA:   3'- -CCGGGCGGaa-GgUC-GUCUGGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 155488 0.71 0.480913
Target:  5'- cGCCgGCCUg-CGGCGGGCCgcggGCCAa -3'
miRNA:   3'- cCGGgCGGAagGUCGUCUGGa---CGGUg -5'
14096 3' -60.7 NC_003521.1 + 49787 0.71 0.50823
Target:  5'- ---gCGUCggCCAGCAGACgCUGCCGCc -3'
miRNA:   3'- ccggGCGGaaGGUCGUCUG-GACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 175007 0.71 0.487224
Target:  5'- cGGCCUGCUUgUCCAGCauggucuugaacagGGGCCgGCCGa -3'
miRNA:   3'- -CCGGGCGGA-AGGUCG--------------UCUGGaCGGUg -5'
14096 3' -60.7 NC_003521.1 + 91073 0.71 0.480913
Target:  5'- cGGCCgcccuCGCCg--CAGaAGACCUGCCACu -3'
miRNA:   3'- -CCGG-----GCGGaagGUCgUCUGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 111276 0.77 0.223841
Target:  5'- gGGCCCGCCgugCCAGC--GCC-GCCGCg -3'
miRNA:   3'- -CCGGGCGGaa-GGUCGucUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 39062 0.71 0.499048
Target:  5'- cGGCUCGUaguUUUCCAGCu--CCUGCCAg -3'
miRNA:   3'- -CCGGGCG---GAAGGUCGucuGGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 72396 0.76 0.287387
Target:  5'- cGCCCGCCg-CC-GCGGcCCUGCCGCc -3'
miRNA:   3'- cCGGGCGGaaGGuCGUCuGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 170726 0.72 0.445646
Target:  5'- cGGCaCGCCggCCAGguGcCCUGCgGCa -3'
miRNA:   3'- -CCGgGCGGaaGGUCguCuGGACGgUG- -5'
14096 3' -60.7 NC_003521.1 + 16803 0.71 0.499048
Target:  5'- cGCCCGCCccgaCCGcCGGGCCcGCCGCu -3'
miRNA:   3'- cCGGGCGGaa--GGUcGUCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 122133 0.71 0.517482
Target:  5'- aGCCUGCCcuccaCCAGCGGuACC-GCCGCc -3'
miRNA:   3'- cCGGGCGGaa---GGUCGUC-UGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 124988 0.75 0.300362
Target:  5'- cGCCCGCCUgagCCAGC--GCCUGCUg- -3'
miRNA:   3'- cCGGGCGGAa--GGUCGucUGGACGGug -5'
14096 3' -60.7 NC_003521.1 + 140685 0.73 0.39559
Target:  5'- aGCCCcacgGCCUUCCcGCAgGACCgccaGCCGCg -3'
miRNA:   3'- cCGGG----CGGAAGGuCGU-CUGGa---CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.