miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 141303 0.66 0.934662
Target:  5'- cGGuCUcCGACCUGaUCcUgGGCGCCCu -3'
miRNA:   3'- -UCuGGuGCUGGACgAGaAgUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 2237 0.66 0.934662
Target:  5'- uAGugCugGACgaGCugggugccgUCUUCGGCuacuGCCCc -3'
miRNA:   3'- -UCugGugCUGgaCG---------AGAAGUCG----CGGG- -5'
14096 5' -56.9 NC_003521.1 + 71362 0.66 0.934662
Target:  5'- -cACCACcuACCUGUUCguccaCGGCGaCCCg -3'
miRNA:   3'- ucUGGUGc-UGGACGAGaa---GUCGC-GGG- -5'
14096 5' -56.9 NC_003521.1 + 86825 0.66 0.934662
Target:  5'- cGGACCcguGCGugCUGCgcaagCAGCuGCUCu -3'
miRNA:   3'- -UCUGG---UGCugGACGagaa-GUCG-CGGG- -5'
14096 5' -56.9 NC_003521.1 + 26349 0.66 0.934662
Target:  5'- uAGGCCucuacgUGGCCUucCUCUccuUCAGCGCCg -3'
miRNA:   3'- -UCUGGu-----GCUGGAc-GAGA---AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 106845 0.66 0.934182
Target:  5'- uGGCCGCGGCCaGCg--UCcgcgcauGGaCGCCCg -3'
miRNA:   3'- uCUGGUGCUGGaCGagaAG-------UC-GCGGG- -5'
14096 5' -56.9 NC_003521.1 + 113706 0.66 0.934182
Target:  5'- aGGugCACGACgcgCUGCUCUUCcacuacgaacacgGGCuggGCCg -3'
miRNA:   3'- -UCugGUGCUG---GACGAGAAG-------------UCG---CGGg -5'
14096 5' -56.9 NC_003521.1 + 70701 0.66 0.929764
Target:  5'- -cGCCGCaAgCUGCg--UCGGCGCCUg -3'
miRNA:   3'- ucUGGUGcUgGACGagaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 150651 0.66 0.929764
Target:  5'- cGugCGCGACgaaggcgGCUCUccggcggCGGCGCCg -3'
miRNA:   3'- uCugGUGCUGga-----CGAGAa------GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 6727 0.66 0.929764
Target:  5'- uGGugCAgGGCCUGacgCagcCAGCGCUCg -3'
miRNA:   3'- -UCugGUgCUGGACga-Gaa-GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 73952 0.66 0.929764
Target:  5'- cGGACUugauguACGACCUGCgcccgCcGCGCCa -3'
miRNA:   3'- -UCUGG------UGCUGGACGagaa-GuCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 187516 0.66 0.929764
Target:  5'- -uACUGCGACCUGCUCcgccuggacuacUUCAGCcauCUCa -3'
miRNA:   3'- ucUGGUGCUGGACGAG------------AAGUCGc--GGG- -5'
14096 5' -56.9 NC_003521.1 + 140641 0.66 0.929764
Target:  5'- cGGCCGagaGCCUGCgccu-GGCGCCCu -3'
miRNA:   3'- uCUGGUgc-UGGACGagaagUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 147321 0.66 0.929764
Target:  5'- -cACCACGACgC-GCUa---GGCGCCCu -3'
miRNA:   3'- ucUGGUGCUG-GaCGAgaagUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 26164 0.66 0.928757
Target:  5'- cGGACUgcugcugcuggagACGGCCaucacggUGCUCUUCAGCacGCUg -3'
miRNA:   3'- -UCUGG-------------UGCUGG-------ACGAGAAGUCG--CGGg -5'
14096 5' -56.9 NC_003521.1 + 208971 0.66 0.928757
Target:  5'- -cACCGCGccGCCgucuucuucaacGCcacCUUCGGCGCCCg -3'
miRNA:   3'- ucUGGUGC--UGGa-----------CGa--GAAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 72658 0.66 0.924643
Target:  5'- --uCCACGAUggGC-CUgggCGGCGCCCc -3'
miRNA:   3'- ucuGGUGCUGgaCGaGAa--GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 129566 0.66 0.924643
Target:  5'- cGGGCCcgACGAUggCUGCUCcgCcGCGCCg -3'
miRNA:   3'- -UCUGG--UGCUG--GACGAGaaGuCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 138387 0.66 0.924643
Target:  5'- -uGCCGCGGCCUGCgg--C-GCGUCUg -3'
miRNA:   3'- ucUGGUGCUGGACGagaaGuCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 127556 0.66 0.924643
Target:  5'- -cGCCGuCGGCCaggUGCUCggcgaUCAGCGUCa -3'
miRNA:   3'- ucUGGU-GCUGG---ACGAGa----AGUCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.