miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 163245 0.66 0.939338
Target:  5'- cGGCCACGGC--GgUCUUCAaCGCCUu -3'
miRNA:   3'- uCUGGUGCUGgaCgAGAAGUcGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 82849 0.66 0.939338
Target:  5'- cGGGCgGCGGCgUcGCUac-CAGCGCCg -3'
miRNA:   3'- -UCUGgUGCUGgA-CGAgaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 44414 0.66 0.939338
Target:  5'- cGGCCuACaACCUGCUCUaccugCcGCcGCCCu -3'
miRNA:   3'- uCUGG-UGcUGGACGAGAa----GuCG-CGGG- -5'
14096 5' -56.9 NC_003521.1 + 116858 0.66 0.939338
Target:  5'- cGACCgcgACGACCUGCgcgCgcagUGGCGCg- -3'
miRNA:   3'- uCUGG---UGCUGGACGa--Gaa--GUCGCGgg -5'
14096 5' -56.9 NC_003521.1 + 167134 0.66 0.939338
Target:  5'- --uCCACGAa--GCUCUugagCAGCGCCUu -3'
miRNA:   3'- ucuGGUGCUggaCGAGAa---GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 126209 0.66 0.939338
Target:  5'- uAGGCCACGcACgUGUUCgacgugUAGCccaGCCCc -3'
miRNA:   3'- -UCUGGUGC-UGgACGAGaa----GUCG---CGGG- -5'
14096 5' -56.9 NC_003521.1 + 131076 0.66 0.939338
Target:  5'- uGGCgGCGACCgcgGCUCgcgCGG-GCuCCg -3'
miRNA:   3'- uCUGgUGCUGGa--CGAGaa-GUCgCG-GG- -5'
14096 5' -56.9 NC_003521.1 + 210517 0.66 0.939338
Target:  5'- uGGAgCGCGGUCUGCUgaagagcuaCUUCGacgacguggagcGCGCCCg -3'
miRNA:   3'- -UCUgGUGCUGGACGA---------GAAGU------------CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 115492 0.66 0.939338
Target:  5'- uGGGCCGCGugUcGCUCUgUGGCcggaCCCa -3'
miRNA:   3'- -UCUGGUGCugGaCGAGAaGUCGc---GGG- -5'
14096 5' -56.9 NC_003521.1 + 115636 0.66 0.939338
Target:  5'- cGGAUCAgGgGCUcgUGCgugUCGGCGCCCc -3'
miRNA:   3'- -UCUGGUgC-UGG--ACGagaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 74364 0.66 0.939338
Target:  5'- cGGCUACGGCCagUGCggCgaCGGCucGCCCu -3'
miRNA:   3'- uCUGGUGCUGG--ACGa-GaaGUCG--CGGG- -5'
14096 5' -56.9 NC_003521.1 + 206692 0.66 0.938881
Target:  5'- uGGGCCugGcCCUGCUCaucgacgacuUUCGuuacgagaacaucGgGCCCa -3'
miRNA:   3'- -UCUGGugCuGGACGAG----------AAGU-------------CgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 71362 0.66 0.934662
Target:  5'- -cACCACcuACCUGUUCguccaCGGCGaCCCg -3'
miRNA:   3'- ucUGGUGc-UGGACGAGaa---GUCGC-GGG- -5'
14096 5' -56.9 NC_003521.1 + 215168 0.66 0.934662
Target:  5'- uGGACCagcACGAUCUGCcgccugaugUCguggUCAcGCGCCa -3'
miRNA:   3'- -UCUGG---UGCUGGACG---------AGa---AGU-CGCGGg -5'
14096 5' -56.9 NC_003521.1 + 141303 0.66 0.934662
Target:  5'- cGGuCUcCGACCUGaUCcUgGGCGCCCu -3'
miRNA:   3'- -UCuGGuGCUGGACgAGaAgUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 86825 0.66 0.934662
Target:  5'- cGGACCcguGCGugCUGCgcaagCAGCuGCUCu -3'
miRNA:   3'- -UCUGG---UGCugGACGagaa-GUCG-CGGG- -5'
14096 5' -56.9 NC_003521.1 + 2237 0.66 0.934662
Target:  5'- uAGugCugGACgaGCugggugccgUCUUCGGCuacuGCCCc -3'
miRNA:   3'- -UCugGugCUGgaCG---------AGAAGUCG----CGGG- -5'
14096 5' -56.9 NC_003521.1 + 26349 0.66 0.934662
Target:  5'- uAGGCCucuacgUGGCCUucCUCUccuUCAGCGCCg -3'
miRNA:   3'- -UCUGGu-----GCUGGAc-GAGA---AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 165018 0.66 0.934662
Target:  5'- gAGGCCGCGAUCgccGCggCUUCcaucGCGgCCu -3'
miRNA:   3'- -UCUGGUGCUGGa--CGa-GAAGu---CGCgGG- -5'
14096 5' -56.9 NC_003521.1 + 133328 0.66 0.934662
Target:  5'- uGGCCgaaGACCagugUGCUCUg-GGCGCCg -3'
miRNA:   3'- uCUGGug-CUGG----ACGAGAagUCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.