miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 118113 0.73 0.606171
Target:  5'- cGACCACGACC-GC-CUcCAGC-CCCg -3'
miRNA:   3'- uCUGGUGCUGGaCGaGAaGUCGcGGG- -5'
14096 5' -56.9 NC_003521.1 + 84903 0.73 0.610115
Target:  5'- gAGACCAgcgaguaggcguagcCGGCCUGCUCgcagggCGuGCGCUCg -3'
miRNA:   3'- -UCUGGU---------------GCUGGACGAGaa----GU-CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 191310 0.73 0.616035
Target:  5'- cGcCUACGAgucgggUCUGCUCUUCuaccuGGCGCCCa -3'
miRNA:   3'- uCuGGUGCU------GGACGAGAAG-----UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 141524 0.73 0.616035
Target:  5'- cGGACCu--GCCUGCUCU---GCGCCCu -3'
miRNA:   3'- -UCUGGugcUGGACGAGAaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 77429 0.73 0.624922
Target:  5'- gGGGCCACGGCCgagaggaUGC-CgccgUUGGUGCCCg -3'
miRNA:   3'- -UCUGGUGCUGG-------ACGaGa---AGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 145762 0.73 0.62591
Target:  5'- cGACUaccugaGCGACCUGCUCUaccUCaacaagacggAGCGCUCg -3'
miRNA:   3'- uCUGG------UGCUGGACGAGA---AG----------UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 52347 0.73 0.633813
Target:  5'- cAGGcCCACGGCCUGCUCguagcucggaGGCGCg- -3'
miRNA:   3'- -UCU-GGUGCUGGACGAGaag-------UCGCGgg -5'
14096 5' -56.9 NC_003521.1 + 2144 0.73 0.635789
Target:  5'- cGGCCGcCGACCUGCUCcagCAGCaGCa- -3'
miRNA:   3'- uCUGGU-GCUGGACGAGaa-GUCG-CGgg -5'
14096 5' -56.9 NC_003521.1 + 202372 0.73 0.635789
Target:  5'- cGGCCGcCGACCUGCUCcagCAGCaGCa- -3'
miRNA:   3'- uCUGGU-GCUGGACGAGaa-GUCG-CGgg -5'
14096 5' -56.9 NC_003521.1 + 117235 0.73 0.635789
Target:  5'- cGGCCGCGGCg-GCUCc-CGGCGCCg -3'
miRNA:   3'- uCUGGUGCUGgaCGAGaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 226081 0.72 0.655532
Target:  5'- cGGCCGCGGCCgGCcCgUCA-CGCCCa -3'
miRNA:   3'- uCUGGUGCUGGaCGaGaAGUcGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 207156 0.72 0.659475
Target:  5'- cGGGCCACGGCCggucgcuggaucccGCUCUgcuGGCcGCCCc -3'
miRNA:   3'- -UCUGGUGCUGGa-------------CGAGAag-UCG-CGGG- -5'
14096 5' -56.9 NC_003521.1 + 145712 0.72 0.662429
Target:  5'- aAGGCCACGcucaagcgcgcgcgGCC-GCUCaa-GGCGCCCg -3'
miRNA:   3'- -UCUGGUGC--------------UGGaCGAGaagUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 139018 0.72 0.665381
Target:  5'- cGACCGCccCCUGggCUUCGugcGCGCCCa -3'
miRNA:   3'- uCUGGUGcuGGACgaGAAGU---CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 16389 0.72 0.665381
Target:  5'- -cACCugGACC-GCUCgcccaccacgCAGCGCCUg -3'
miRNA:   3'- ucUGGugCUGGaCGAGaa--------GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 54515 0.72 0.675206
Target:  5'- uGGACCAgGAUCUGCa---CGGCGCCg -3'
miRNA:   3'- -UCUGGUgCUGGACGagaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 27797 0.72 0.675206
Target:  5'- cGGCCcgcuCGGCCgGCUCgccCGGCGCCa -3'
miRNA:   3'- uCUGGu---GCUGGaCGAGaa-GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 14787 0.72 0.684997
Target:  5'- aGGugCugGugCUGCUggaCUgguUCGGCGCCg -3'
miRNA:   3'- -UCugGugCugGACGA---GA---AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 154024 0.72 0.694748
Target:  5'- cAGcACCugGugCaUGCUCUUgccgcggcaGGCGCCCa -3'
miRNA:   3'- -UC-UGGugCugG-ACGAGAAg--------UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 37175 0.72 0.694748
Target:  5'- cGACCacaagucucGCGACCUGCagUUCAGCcguaaCCCg -3'
miRNA:   3'- uCUGG---------UGCUGGACGagAAGUCGc----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.