miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 130329 1.11 0.00274
Target:  5'- aAGACCACGACCUGCUCUUCAGCGCCCu -3'
miRNA:   3'- -UCUGGUGCUGGACGAGAAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 76851 0.79 0.333224
Target:  5'- aAGGCCcgGCGACC-GCcaUCUUCGGCGUCCg -3'
miRNA:   3'- -UCUGG--UGCUGGaCG--AGAAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 155202 0.77 0.394948
Target:  5'- aGGugCACGACCUcucggccCUCUUC-GCGCCCu -3'
miRNA:   3'- -UCugGUGCUGGAc------GAGAAGuCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 161621 0.77 0.394948
Target:  5'- cGGGCaACGugCUGCguuUCUUCGGCGCCa -3'
miRNA:   3'- -UCUGgUGCugGACG---AGAAGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 191255 0.77 0.408983
Target:  5'- -cGCCGCGGCCcacgcggcagguggUGCUCUUCAuGaCGCCCa -3'
miRNA:   3'- ucUGGUGCUGG--------------ACGAGAAGU-C-GCGGG- -5'
14096 5' -56.9 NC_003521.1 + 85718 0.77 0.419924
Target:  5'- aAGuccuCCACGcCCUGCUCcugCAGCGCCg -3'
miRNA:   3'- -UCu---GGUGCuGGACGAGaa-GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 153994 0.76 0.463592
Target:  5'- cGGACCACGaccGCCUGCUggaCUUCAG-GCUCu -3'
miRNA:   3'- -UCUGGUGC---UGGACGA---GAAGUCgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 187444 0.76 0.47261
Target:  5'- -cGCCGCGGCCUGCUCcugcUCGGUcugucgGCCCc -3'
miRNA:   3'- ucUGGUGCUGGACGAGa---AGUCG------CGGG- -5'
14096 5' -56.9 NC_003521.1 + 130470 0.75 0.481715
Target:  5'- -cGCCAgCGcuCCUGCUCUUCGGCGaCCUg -3'
miRNA:   3'- ucUGGU-GCu-GGACGAGAAGUCGC-GGG- -5'
14096 5' -56.9 NC_003521.1 + 170524 0.75 0.481715
Target:  5'- -uGCUggGCGACCUGCaccgcuuucUCUUCGGCGCCg -3'
miRNA:   3'- ucUGG--UGCUGGACG---------AGAAGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 62079 0.75 0.501106
Target:  5'- cAGGCCACGugCgaccaguccaaccggGaacgCUUCGGCGCCCg -3'
miRNA:   3'- -UCUGGUGCugGa--------------Cga--GAAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 30644 0.75 0.509521
Target:  5'- cGGCgGCGcGCCUGCUCgUCauGGCGCCUa -3'
miRNA:   3'- uCUGgUGC-UGGACGAGaAG--UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 74305 0.75 0.51894
Target:  5'- -cACCAacgaGGCCgUGCUCUUCGGuCGCCUg -3'
miRNA:   3'- ucUGGUg---CUGG-ACGAGAAGUC-GCGGG- -5'
14096 5' -56.9 NC_003521.1 + 141110 0.74 0.566961
Target:  5'- -uACUGCGGCCcGCgcagCUUCuGCGCCCg -3'
miRNA:   3'- ucUGGUGCUGGaCGa---GAAGuCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 135209 0.74 0.576714
Target:  5'- cGAgCACGcCCUGCUg--CAGCGCCUg -3'
miRNA:   3'- uCUgGUGCuGGACGAgaaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 131298 0.74 0.576714
Target:  5'- cGACCuguacACGcCCUGCUCgagCAGCGgCCg -3'
miRNA:   3'- uCUGG-----UGCuGGACGAGaa-GUCGCgGG- -5'
14096 5' -56.9 NC_003521.1 + 239856 0.73 0.586504
Target:  5'- cAGACCGcCGGCCU-CUCguu-GCGCCCa -3'
miRNA:   3'- -UCUGGU-GCUGGAcGAGaaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 39629 0.73 0.586504
Target:  5'- cAGACCGcCGGCCU-CUCguu-GCGCCCa -3'
miRNA:   3'- -UCUGGU-GCUGGAcGAGaaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 73726 0.73 0.596326
Target:  5'- cGGGCCGCGACCgcuucgugcagcUGCUCUUCuacauguGgGCCg -3'
miRNA:   3'- -UCUGGUGCUGG------------ACGAGAAGu------CgCGGg -5'
14096 5' -56.9 NC_003521.1 + 145397 0.73 0.596326
Target:  5'- cGGCCugGGCCUGCUCaUCGaC-CCCa -3'
miRNA:   3'- uCUGGugCUGGACGAGaAGUcGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.