miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 150651 0.66 0.929764
Target:  5'- cGugCGCGACgaaggcgGCUCUccggcggCGGCGCCg -3'
miRNA:   3'- uCugGUGCUGga-----CGAGAa------GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 147321 0.66 0.929764
Target:  5'- -cACCACGACgC-GCUa---GGCGCCCu -3'
miRNA:   3'- ucUGGUGCUG-GaCGAgaagUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 129566 0.66 0.924643
Target:  5'- cGGGCCcgACGAUggCUGCUCcgCcGCGCCg -3'
miRNA:   3'- -UCUGG--UGCUG--GACGAGaaGuCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 108488 0.66 0.934662
Target:  5'- uGAUCcugGCGAuCCUGCUCUUCGucuaccgcuGCGUCg -3'
miRNA:   3'- uCUGG---UGCU-GGACGAGAAGU---------CGCGGg -5'
14096 5' -56.9 NC_003521.1 + 60268 0.66 0.924118
Target:  5'- uGGcCCACGACCUgguggggcuagGCUucaacuacaacacCUgCAGCGCCUa -3'
miRNA:   3'- -UCuGGUGCUGGA-----------CGA-------------GAaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 127556 0.66 0.924643
Target:  5'- -cGCCGuCGGCCaggUGCUCggcgaUCAGCGUCa -3'
miRNA:   3'- ucUGGU-GCUGG---ACGAGa----AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 129118 0.66 0.94803
Target:  5'- cGGCgCACGGaCUGgaCgUCGGCGUCCg -3'
miRNA:   3'- uCUG-GUGCUgGACgaGaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 133328 0.66 0.934662
Target:  5'- uGGCCgaaGACCagugUGCUCUg-GGCGCCg -3'
miRNA:   3'- uCUGGug-CUGG----ACGAGAagUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 127346 0.66 0.934662
Target:  5'- cGGCCACGAUCUGCa------CGCCCu -3'
miRNA:   3'- uCUGGUGCUGGACGagaagucGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 116858 0.66 0.939338
Target:  5'- cGACCgcgACGACCUGCgcgCgcagUGGCGCg- -3'
miRNA:   3'- uCUGG---UGCUGGACGa--Gaa--GUCGCGgg -5'
14096 5' -56.9 NC_003521.1 + 115636 0.66 0.939338
Target:  5'- cGGAUCAgGgGCUcgUGCgugUCGGCGCCCc -3'
miRNA:   3'- -UCUGGUgC-UGG--ACGagaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 149813 0.66 0.934662
Target:  5'- cGGCCGugacCGACCUGCUgcagCUgcaacagcagcaUCGGCGUUCg -3'
miRNA:   3'- uCUGGU----GCUGGACGA----GA------------AGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 165018 0.66 0.934662
Target:  5'- gAGGCCGCGAUCgccGCggCUUCcaucGCGgCCu -3'
miRNA:   3'- -UCUGGUGCUGGa--CGa-GAAGu---CGCgGG- -5'
14096 5' -56.9 NC_003521.1 + 130359 0.66 0.934662
Target:  5'- cGGCCGCaggcGCCgUGCgcgC-UCAGCGCCa -3'
miRNA:   3'- uCUGGUGc---UGG-ACGa--GaAGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 215168 0.66 0.934662
Target:  5'- uGGACCagcACGAUCUGCcgccugaugUCguggUCAcGCGCCa -3'
miRNA:   3'- -UCUGG---UGCUGGACG---------AGa---AGU-CGCGGg -5'
14096 5' -56.9 NC_003521.1 + 44414 0.66 0.939338
Target:  5'- cGGCCuACaACCUGCUCUaccugCcGCcGCCCu -3'
miRNA:   3'- uCUGG-UGcUGGACGAGAa----GuCG-CGGG- -5'
14096 5' -56.9 NC_003521.1 + 70701 0.66 0.929764
Target:  5'- -cGCCGCaAgCUGCg--UCGGCGCCUg -3'
miRNA:   3'- ucUGGUGcUgGACGagaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 126209 0.66 0.939338
Target:  5'- uAGGCCACGcACgUGUUCgacgugUAGCccaGCCCc -3'
miRNA:   3'- -UCUGGUGC-UGgACGAGaa----GUCG---CGGG- -5'
14096 5' -56.9 NC_003521.1 + 72658 0.66 0.924643
Target:  5'- --uCCACGAUggGC-CUgggCGGCGCCCc -3'
miRNA:   3'- ucuGGUGCUGgaCGaGAa--GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 202465 0.66 0.934662
Target:  5'- uAGugCugGACgaGCugggugccgUCUUCGGCuacuGCCCc -3'
miRNA:   3'- -UCugGugCUGgaCG---------AGAAGUCG----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.