miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 121007 0.66 0.947616
Target:  5'- cGGAgCCGCugcuccaGACCUcCUCggCGGCGCCg -3'
miRNA:   3'- -UCU-GGUG-------CUGGAcGAGaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 60268 0.66 0.924118
Target:  5'- uGGcCCACGACCUgguggggcuagGCUucaacuacaacacCUgCAGCGCCUa -3'
miRNA:   3'- -UCuGGUGCUGGA-----------CGA-------------GAaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 133328 0.66 0.934662
Target:  5'- uGGCCgaaGACCagugUGCUCUg-GGCGCCg -3'
miRNA:   3'- uCUGGug-CUGG----ACGAGAagUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 127993 0.66 0.943358
Target:  5'- uGACCACGAaguCCUGCUUcaucucgUUCAccGUGCgCg -3'
miRNA:   3'- uCUGGUGCU---GGACGAG-------AAGU--CGCGgG- -5'
14096 5' -56.9 NC_003521.1 + 6727 0.66 0.929764
Target:  5'- uGGugCAgGGCCUGacgCagcCAGCGCUCg -3'
miRNA:   3'- -UCugGUgCUGGACga-Gaa-GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 149813 0.66 0.934662
Target:  5'- cGGCCGugacCGACCUGCUgcagCUgcaacagcagcaUCGGCGUUCg -3'
miRNA:   3'- uCUGGU----GCUGGACGA----GA------------AGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 73952 0.66 0.929764
Target:  5'- cGGACUugauguACGACCUGCgcccgCcGCGCCa -3'
miRNA:   3'- -UCUGG------UGCUGGACGagaa-GuCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 130302 0.66 0.941147
Target:  5'- gAGGCCGCGGcgccgcgcauCCagguccacuacaagcUGCUCUUCGG-GCUCa -3'
miRNA:   3'- -UCUGGUGCU----------GG---------------ACGAGAAGUCgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 129118 0.66 0.94803
Target:  5'- cGGCgCACGGaCUGgaCgUCGGCGUCCg -3'
miRNA:   3'- uCUG-GUGCUgGACgaGaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 103842 0.66 0.949663
Target:  5'- gGGGCCGCGuCUcgGC-CUcguccaggcuggcgaUCAGCGCCg -3'
miRNA:   3'- -UCUGGUGCuGGa-CGaGA---------------AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 149064 0.66 0.943794
Target:  5'- uGGGCUucgacGCGGCCgcGCUCUcgCA-CGCCCu -3'
miRNA:   3'- -UCUGG-----UGCUGGa-CGAGAa-GUcGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 140641 0.66 0.929764
Target:  5'- cGGCCGagaGCCUGCgccu-GGCGCCCu -3'
miRNA:   3'- uCUGGUgc-UGGACGagaagUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 129566 0.66 0.924643
Target:  5'- cGGGCCcgACGAUggCUGCUCcgCcGCGCCg -3'
miRNA:   3'- -UCUGG--UGCUG--GACGAGaaGuCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 26164 0.66 0.928757
Target:  5'- cGGACUgcugcugcuggagACGGCCaucacggUGCUCUUCAGCacGCUg -3'
miRNA:   3'- -UCUGG-------------UGCUGG-------ACGAGAAGUCG--CGGg -5'
14096 5' -56.9 NC_003521.1 + 115636 0.66 0.939338
Target:  5'- cGGAUCAgGgGCUcgUGCgugUCGGCGCCCc -3'
miRNA:   3'- -UCUGGUgC-UGG--ACGagaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 208971 0.66 0.928757
Target:  5'- -cACCGCGccGCCgucuucuucaacGCcacCUUCGGCGCCCg -3'
miRNA:   3'- ucUGGUGC--UGGa-----------CGa--GAAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 152591 0.66 0.94803
Target:  5'- uGGAguaCACGAUg-GcCUCcUCGGCGCCCu -3'
miRNA:   3'- -UCUg--GUGCUGgaC-GAGaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 187516 0.66 0.929764
Target:  5'- -uACUGCGACCUGCUCcgccuggacuacUUCAGCcauCUCa -3'
miRNA:   3'- ucUGGUGCUGGACGAG------------AAGUCGc--GGG- -5'
14096 5' -56.9 NC_003521.1 + 126209 0.66 0.939338
Target:  5'- uAGGCCACGcACgUGUUCgacgugUAGCccaGCCCc -3'
miRNA:   3'- -UCUGGUGC-UGgACGAGaa----GUCG---CGGG- -5'
14096 5' -56.9 NC_003521.1 + 106845 0.66 0.934182
Target:  5'- uGGCCGCGGCCaGCg--UCcgcgcauGGaCGCCCg -3'
miRNA:   3'- uCUGGUGCUGGaCGagaAG-------UC-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.