miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 27797 0.72 0.675206
Target:  5'- cGGCCcgcuCGGCCgGCUCgccCGGCGCCa -3'
miRNA:   3'- uCUGGu---GCUGGaCGAGaa-GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 27882 0.7 0.796977
Target:  5'- cGACCGCauggaggcgGGCUUGUccUCUUaCAGCGCCUc -3'
miRNA:   3'- uCUGGUG---------CUGGACG--AGAA-GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 28156 0.67 0.921463
Target:  5'- cGGCgGCGACCaUGCccgcgacgcccUCUUCGGgucgcauggccaaguCGCCCa -3'
miRNA:   3'- uCUGgUGCUGG-ACG-----------AGAAGUC---------------GCGGG- -5'
14096 5' -56.9 NC_003521.1 + 29257 0.71 0.723675
Target:  5'- cGGCgACGACCagccGCUCUUCaugaguacgggGGCGCUCu -3'
miRNA:   3'- uCUGgUGCUGGa---CGAGAAG-----------UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 29463 0.67 0.915986
Target:  5'- uGAuCCGCGACCgGCUgCUgCGggaccccaaccacucGCGCCCg -3'
miRNA:   3'- uCU-GGUGCUGGaCGA-GAaGU---------------CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 30644 0.75 0.509521
Target:  5'- cGGCgGCGcGCCUGCUCgUCauGGCGCCUa -3'
miRNA:   3'- uCUGgUGC-UGGACGAGaAG--UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 31120 0.69 0.8056
Target:  5'- cGGACCugGagcGCCUGUUCguggagCAGCGUUa -3'
miRNA:   3'- -UCUGGugC---UGGACGAGaa----GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 31896 0.67 0.895081
Target:  5'- cAGGCCGCGGCacaggaaCUGCggcaggCAGCGCgCg -3'
miRNA:   3'- -UCUGGUGCUG-------GACGagaa--GUCGCGgG- -5'
14096 5' -56.9 NC_003521.1 + 33012 0.68 0.882629
Target:  5'- cAGGCUcuCGGCCaGCUUgacCAGCGCCg -3'
miRNA:   3'- -UCUGGu-GCUGGaCGAGaa-GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 36680 0.68 0.882629
Target:  5'- cGGCCGagcugaGGCCggGCUC--CGGCGCCUg -3'
miRNA:   3'- uCUGGUg-----CUGGa-CGAGaaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 37175 0.72 0.694748
Target:  5'- cGACCacaagucucGCGACCUGCagUUCAGCcguaaCCCg -3'
miRNA:   3'- uCUGG---------UGCUGGACGagAAGUCGc----GGG- -5'
14096 5' -56.9 NC_003521.1 + 38667 0.7 0.779323
Target:  5'- --uCCGCGuCCUGCggUCUggcUCGGCGCCa -3'
miRNA:   3'- ucuGGUGCuGGACG--AGA---AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 38808 0.68 0.854008
Target:  5'- cGGACCcccgGACCUGgUCg-CGGCGCCg -3'
miRNA:   3'- -UCUGGug--CUGGACgAGaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 39629 0.73 0.586504
Target:  5'- cAGACCGcCGGCCU-CUCguu-GCGCCCa -3'
miRNA:   3'- -UCUGGU-GCUGGAcGAGaaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 40355 0.7 0.770308
Target:  5'- aGGAUCACGGCgCUGCg---CAGgGCCUu -3'
miRNA:   3'- -UCUGGUGCUG-GACGagaaGUCgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 40432 0.68 0.854008
Target:  5'- -cACCACGGCCaggUGCUCgc--GCGCUCu -3'
miRNA:   3'- ucUGGUGCUGG---ACGAGaaguCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 42608 0.69 0.814076
Target:  5'- -uACCACGGCC-GC-CggCGGCGCCg -3'
miRNA:   3'- ucUGGUGCUGGaCGaGaaGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 42967 0.69 0.822398
Target:  5'- cGAgCGCGACCcGC----CGGCGCCCa -3'
miRNA:   3'- uCUgGUGCUGGaCGagaaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 43397 0.7 0.770308
Target:  5'- uGGCCAUGGCCUcuucGCUU-UCGGCGUCg -3'
miRNA:   3'- uCUGGUGCUGGA----CGAGaAGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 43494 0.7 0.761178
Target:  5'- uGGCCGCGGCg-GCcaacaUCcgUCAGCGCCUg -3'
miRNA:   3'- uCUGGUGCUGgaCG-----AGa-AGUCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.