miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 1058 0.69 0.838553
Target:  5'- gGGGCCAcCGACCUGCgccagCUcUCGccgcGCGaCCCc -3'
miRNA:   3'- -UCUGGU-GCUGGACGa----GA-AGU----CGC-GGG- -5'
14096 5' -56.9 NC_003521.1 + 2144 0.73 0.635789
Target:  5'- cGGCCGcCGACCUGCUCcagCAGCaGCa- -3'
miRNA:   3'- uCUGGU-GCUGGACGAGaa-GUCG-CGgg -5'
14096 5' -56.9 NC_003521.1 + 2237 0.66 0.934662
Target:  5'- uAGugCugGACgaGCugggugccgUCUUCGGCuacuGCCCc -3'
miRNA:   3'- -UCugGugCUGgaCG---------AGAAGUCG----CGGG- -5'
14096 5' -56.9 NC_003521.1 + 3647 0.68 0.854008
Target:  5'- -uGCCACGGCCgccGCcgUCUgccUCGGCGgCCg -3'
miRNA:   3'- ucUGGUGCUGGa--CG--AGA---AGUCGCgGG- -5'
14096 5' -56.9 NC_003521.1 + 6727 0.66 0.929764
Target:  5'- uGGugCAgGGCCUGacgCagcCAGCGCUCg -3'
miRNA:   3'- -UCugGUgCUGGACga-Gaa-GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 13688 0.68 0.875773
Target:  5'- cGGCgACGACUUGCgagugCUUUcgAGCGCUg -3'
miRNA:   3'- uCUGgUGCUGGACGa----GAAG--UCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 14756 0.68 0.889278
Target:  5'- cGGCCGCGGCCgggGCgcgcCUUC-GUGgCCg -3'
miRNA:   3'- uCUGGUGCUGGa--CGa---GAAGuCGCgGG- -5'
14096 5' -56.9 NC_003521.1 + 14787 0.72 0.684997
Target:  5'- aGGugCugGugCUGCUggaCUgguUCGGCGCCg -3'
miRNA:   3'- -UCugGugCugGACGA---GA---AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 15735 0.7 0.761178
Target:  5'- cGugUACGAUgUGC-CaUCGGCGCCUg -3'
miRNA:   3'- uCugGUGCUGgACGaGaAGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 15975 0.7 0.796977
Target:  5'- -cGCUACGGCCUGCUCUaCAccgaGUCCa -3'
miRNA:   3'- ucUGGUGCUGGACGAGAaGUcg--CGGG- -5'
14096 5' -56.9 NC_003521.1 + 16389 0.72 0.665381
Target:  5'- -cACCugGACC-GCUCgcccaccacgCAGCGCCUg -3'
miRNA:   3'- ucUGGugCUGGaCGAGaa--------GUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 16606 0.69 0.825683
Target:  5'- uGGACCGCGAcuacgggcgucaguaCCgcugGCUCUgucgCGGCGaCCg -3'
miRNA:   3'- -UCUGGUGCU---------------GGa---CGAGAa---GUCGCgGG- -5'
14096 5' -56.9 NC_003521.1 + 18441 0.67 0.907946
Target:  5'- aAGACgCGCGGCCUGUgccgCUUCGaccgcgggcuGCGCg- -3'
miRNA:   3'- -UCUG-GUGCUGGACGa---GAAGU----------CGCGgg -5'
14096 5' -56.9 NC_003521.1 + 21514 0.66 0.946361
Target:  5'- uGGGCUACuGCCUGCccaacacgcuggcCUUCAuGgGCCCg -3'
miRNA:   3'- -UCUGGUGcUGGACGa------------GAAGU-CgCGGG- -5'
14096 5' -56.9 NC_003521.1 + 22544 0.67 0.895716
Target:  5'- uAGGCCugGccuucgcccucACCgUGCUCUUCuuCGUCCu -3'
miRNA:   3'- -UCUGGugC-----------UGG-ACGAGAAGucGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 24265 0.68 0.889278
Target:  5'- cGGCgGCGACCUGgaUCUcccUCGGCagGUCCa -3'
miRNA:   3'- uCUGgUGCUGGACg-AGA---AGUCG--CGGG- -5'
14096 5' -56.9 NC_003521.1 + 25358 0.67 0.895716
Target:  5'- gAGGCUAUGugUgacuugGUUCcUCGGCGCCg -3'
miRNA:   3'- -UCUGGUGCugGa-----CGAGaAGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 26164 0.66 0.928757
Target:  5'- cGGACUgcugcugcuggagACGGCCaucacggUGCUCUUCAGCacGCUg -3'
miRNA:   3'- -UCUGG-------------UGCUGG-------ACGAGAAGUCG--CGGg -5'
14096 5' -56.9 NC_003521.1 + 26349 0.66 0.934662
Target:  5'- uAGGCCucuacgUGGCCUucCUCUccuUCAGCGCCg -3'
miRNA:   3'- -UCUGGu-----GCUGGAc-GAGA---AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 27088 0.7 0.761178
Target:  5'- -cACCACGGCCU--UCUgCGGCGCCg -3'
miRNA:   3'- ucUGGUGCUGGAcgAGAaGUCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.